The largest database of trusted experimental protocols

51 protocols using rtx 5ms

1

Analysis of Hop Volatiles by GC-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
The analysis of volatile compounds of hop leaves and cones samples after supercritical fluid extraction was performed using GC-2010 (Shimadzu, Kyoto, Japan) gas chromatography system with AOC-5000 (Shimadzu, Kyoto, Japan) autoinjector and GCMS-QP2010 mass-spectrometry detector (Shimadzu, Kyoto, Japan). Separation was carried out using Rtx-5MS (Restek, Bellefonte, PA, USA) column (30 m × 0.25 mm × 0.25 µm) and helium as the carrier gas. The analysis was performed under the following conditions: injector temperature 240 °C; split ratio 1:10; injection volume 1 µL; and flow rate 1.2 mL/min. The column oven temperature was programmed from 60 °C (held for 3 min), heated up to 150 °C at the speed of 2 °C/min, held at 150 °C for 5 min and then heated to 285 °C at the speed of 10 °C/min (held for 8 min). Mass spectrometry detection was performed using electron impact (EI) ionization using 200 °C ion source temperature, 70 eV ionization energy, and 30–400 m/z scan range. Volatile compounds were identified using NIST05 (NIST, Gaithersburg, MD, USA) mass spectra library and by calculating RI (retention indices), which were calculated using n-alkanes (C8–C20) retention times for the same analysis conditions as for the samples.
+ Open protocol
+ Expand
2

GC-MS Quantification of Raffinose

Check if the same lab product or an alternative is used in the 5 most similar protocols
Raffinose was extracted using the protocol employed for hydrophilic compounds, and the extracts were injected into the GC–MS instrument (Shimadzu). The operating conditions were as follows: carrier gas = helium (1.00 mL/min); injection volume = 1 μL; split mode ratio = 25:1; injection temperature = 290 °C; column = Rtx-5MS (30 m × 0.25 mm, 0.25 μm; Restek); temperature program = start at 150 °C, hold for 2 min, increase at 15 °C/min to 320 °C, hold for 25 min; ion source and interface temperatures = 230 and 280 °C, respectively. Ions with m/z 361 and 217 were used for SIM. Data were processed by Labsolutions GCMSsolution software (version 4.20, Shimadzu), and calibration curves for absolute quantification were plotted in the range of 0.10–50.00 μg.
+ Open protocol
+ Expand
3

GC/MS Analysis of Antimicrobial Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
All fractions whose antimicrobial activity was not affected by proteinase K were subjected to GC/MS armed with a Restek (Bellefonte, PA, USA) Rtx-5MS (Crossbond diphenyl dimethylpolysiloxane) capillary column (30 m × 0.25 mm × 0.25 mm). A total of 1 μL was injected using a split mode, with a split ratio of 10, an injector temperature of 240 °C and an initial oven temperature of 160 °C. Helium was applied as the carrier gas at a constant linear velocity of 46.6 cm/s. The oven temperature program was set to isothermal 160 °C for 1 min, with a temperature gradient of 160–300 °C at 10 °C/min. The mass spectrometer was operated with an ion source temperature of 200 °C and an interface temperature of 300 °C. The analysis was carried out in a full-scan mode with a mass range of 42–500 m/z. The peaks were fully or partially characterized by searching the National Institute of Standards and Technology (NIST) 14 library, with similarity indices (SI) > 85.
+ Open protocol
+ Expand
4

GC-MS Analysis of Complex Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gas chromatography-mass spectrometry (GC-MS) analysis was carried out (model; Japan, Kyoto, Shimadzu Corporation, QP2010 Ultra) on a capillary column with a 0.25 mm inner diameter and a 30 m length. The stationary phase used was of 0.25 mm film thickness (U.S.A, Restek Corporation, Rtx-5MS, Bellefonte, PA, USA). Helium (99.999%) was employed as the carrier gas, moving at a constant speed of 36.3 cm/s. A sample volume of 1 l was injected using the AOC-20i + s auto-injector. At 290 °C, the injection port was maintained in split-less mode. The GC oven was preheated to the following temperature: 5 min at 50 °C, followed by 10 min of holding at 300 °C at a rate of 2 °C/min. The m/z range of 30 to 700 was used to construct a total ion chromatogram. By comparing their mass spectra to the National Institute of Standards and Technology’s database (NIST), and with the literature, GC peaks were identified [70 (link),71 (link)]. By comparing each constituent’s peak area to the chromatogram’s overall peak area, the relative percentage quantity of each constituent was calculated [72 (link)].
+ Open protocol
+ Expand
5

GC-MS Analysis of Organic Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
GC–MS data was acquired with Single Quadrupole Mass Spectrometer and Gas Chromatograph (Trace 1310) (Thermo Fisher Scientific, USA). The GC column was 30 m long dimethyl (95%)/diphenyl polysiloxane (5%) RTX-5MS with 0.25 mm ID, film of 0.25 µm, and guard column (10 m) (Restek, PA, USA). Starting temperature of GC oven was 60 °C for 60 s and the temperature increased to 325 °C (@10 °C/min) and final hold time was 5 min. The MS ion source temperature was 230 °C. Helium acts as carrier gas.
+ Open protocol
+ Expand
6

Chromatographic Analysis of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
The chromatographic separation was recorded using Shimadzu GC/MS-QP2010 (Japan) apparatus equipped with Rtx-5MS (Restek, Bellefonte, PA, USA) fused-bonded column (30 mL, 0.25 mm i.d., and 0.25 µm film thickness) that is coupled to SSQ 7000 quadrupole mass spectrometer, Thermo-Finnigan, Germany. The chromatographic procedure and conditions followed the method adopted by Mostafa (2018) [21 ]. Identification of compounds was performed according to comparing the mass spectra, calculated retention indices by those published in Adams [22 ], NIST Mass Spectral Library, co-chromatographic standards, and other literature [20 (link),23 (link),24 (link)].
+ Open protocol
+ Expand
7

Sensitive Metabolite Extraction and Derivatization

Check if the same lab product or an alternative is used in the 5 most similar protocols
100 Mg of finely freeze-dried powdered sample (for both fruits) was extracted with 5 mL 100% methanol with sonication for 30 min using Branson CPX-952-518R set at 36 °C, (Branson Ultrasonics, Carouge, SA Switzerland.) and with regular shaking, followed by centrifugation (LC-04C 80-2C regen lab prp centrifuge, Zhejiang, China) at 12,000× g for 10 min to eliminate debris. For evaluation of biological replicates, 3 independent samples for each fruit was analyzed under the same conditions. Then, 100 µL of the methanol extract was kept in opened screw-cap vials and left to evaporate under stream of nitrogen gas until full dryness. For derivatization, 150 µL of N-methyl-N-(trimethylsilyl)-trifluoroacetamide (MSTFA), previously diluted 1/1 with anhydrous pyridine, was mixed with the dried methanol extract and incubated (Yamato Scientific DGS400 Oven, QTE TECHNOLOGIES, Hanoi, Vietnam) for 45 min at 60 °C previous analysis using GC–MS. Separation of silylated derivatives was completed on a Rtx-5MS Restek, Bellefonte, PA, USA (30-m length, 0.25-mm inner diameter and 0.25-m film). Analysis of these primary metabolites followed the exact protocol detailed in Sedeek, M.S. et al., and Farag, M.A. et al. [11 (link),12 (link)].
+ Open protocol
+ Expand
8

GC-MS Analysis of Compounds via Kovats Index

Check if the same lab product or an alternative is used in the 5 most similar protocols
The samples were analyzed using LECO Pegasus 4D GC×GC−TOF MS (St Joseph, MI, USA). The first dimension capillary column was Restek Rtx-5MS (30 m × 0.25 mm × 0.25 μm) and the second capillary column was Restek Rtx-200 (2 m × 0.25 mm × 0.25 μm). The GC temperature program was set as follows: injection temperature: 280 °C; oven temperature: 40 °C maintained for 1 min, and increased at a rate of 10 °C/min to 310 °C and held constant for 8 min. The helium flow rate was set at 1 mL/min. The mass spectrometry temperature was set at 320 °C. The ion source temperature was 200 °C, and the analysis mass range was 50-800 m/z. KWM-EO was ran in hexane with a dilution of 1 mg/mL. Hexadecane solution, 64.25 μg/mL, was used as an internal standard to monitor the shift of retention time. Compounds were identified by matching the mass spectra fragmentation patterns, and the results were compared with LECO/Fiehn and Wiley Registry 9th Edition mass spectral library and NIST. Linear Kovats index of n-alkanes (C7-C40, C7-C30) were calculated for each compound and compared with the literature to identify the compound ID [30 (link)].
+ Open protocol
+ Expand
9

Quantitative Chemical Analysis by GC

Check if the same lab product or an alternative is used in the 5 most similar protocols
A sample of 30 -60 µL (1-2 drops) was taken from the batch at room temperature after the reaction. The sample was then diluted in isopropanol and the internal standard nonan was added. The composition of the sample was determined via the gas chromatography setup GC2010plus by Shimadzu from the height of the different maxima. For the measurement, the gas chromatography column Restek RTX5-MS (30 mm x 0.25 mm x 0.25 µm) was used.
+ Open protocol
+ Expand
10

GC-FID and GC-MS Analysis of Essential Oils

Check if the same lab product or an alternative is used in the 5 most similar protocols
Shimadzu GC-17A gas chromatograph (Shimadzu Corporation, Kyoto, Japan) with a DB-5 fused-bonded cap column (Phenomenex; 29 m × 0.25 mm i.d., film thickness 0.25 µm; Torrance, CA, USA) and a FID detector was used for the quantitative analysis of the samples. Shimadzu GC-2010 plus a gas chromatograph (Shimadzu Corporation, Kyoto, Japan) were employed for GC analyses and equipped with Rtx-5MS (Restek, Bellefonte, PA, USA) and a quadrupole mass spectrometer for identification of the volatile oil components. Instrumental settings were adjusted according to what was previously reported [5 (link)]. Three independent runs were used to calculate AUP (areas under the peaks) using Class GC 10® software (Shimadzu Corporation, Kyoto, Japan) in which the total area is considered 100%. Meanwhile, for qualitative interpretation of the chromatograms, GC solution® software ver. 2.4 (Shimadzu Corporation, Kyoto, Japan) was used. For comparing and identifying the constituents of the different essential oil samples, Wiley Registry of Mass Spectral Data 8th edition, NIST MassSpectral Library (December 2011), and previously reported techniques were employed [6 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!