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11 protocols using murine rankl

1

In vitro Osteoclast Differentiation and Resorption Assay

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In vitro osteoclast cultures were performed essentially as described before (54 (link), 55 (link)). Bone marrow cells obtained by flushing the tibia and femur of wild type or mutant mice were cultured in the presence of 10 ng/ml murine M-CSF (Peprotech) for 2 days in α-MEM medium (Sigma) supplemented with 10% FCS (Gibco) and antibiotics. Non-adherent cells were then plated at the concentration of 1.5 × 105 cells/cm2 and cultured in the presence of 50 ng/ml recombinant murine M-CSF and 50 ng/ml murine RANKL (Peprotech) with medium changes every 2 days. In parallel macrophage cultures, the cells were cultured under identical conditions except that RANKL was omitted.
Cultures were terminated and osteoclast-specific staining was performed using a commercial tartrate-resistant acid phosphatase (TRAP) staining kit (Sigma-Aldrich) at the indicated times after the first addition of RANKL. Photomicrographs were taken using a Leica DMI6000B inverted microscope. The images were then analyzed either manually or by the ImageJ software. Osteoclasts were defined as TRAP-positive cells with 3 or more nuclei.
For in vitro resorption assays, osteoclasts were cultured under similar conditions for 7 days on an artificial hydroxyapatite surface (Sigma-Aldrich) followed by washing, imaging by dark field microscopy and further analysis by ImageJ software.
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2

Osteoclastogenesis Regulation by FAM19A5

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Human recombinant FAM19A5 was purchased from Biovendor (Brno, Czech Republic). Murine recombinant M-CSF and murine RANKL were purchased from Peprotech (Rocky Hill, NJ, USA). LPS was purchased from Sigma-Aldrich (St. Louis, MO, USA). WKYMVm and WRW4 were synthesized from Anygen (Gwangju, Korea). Polymyxin B, PTX, and PD98059 were purchased from Calbiochem (San Diego, CA, USA). LY294002 was obtained from BIOMOL Research Laboratories, Inc. (Plymouth Meeting, PA, USA). MK-2206 was purchased from Selleck Chemicals (Houston, TX, USA). Phospho-Akt (Ser473), Akt, phospho-ERK, ERK, RANK, TRAF6, and β-actin antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). c-fos and NFATc1 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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3

Osteoclast Differentiation Pathway Modulators

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Human recombinant SAA, murine recombinant M-CSF, human recombinant M-CSF, and murine RANKL were purchased from Peprotech (Rocky Hill, NJ, USA). Pam3CSK4 was purchased from Invitrogen (San Diego, CA, USA). Lipopolysaccharide (LPS) and oxidized ATP were purchased from Sigma-Aldrich (St. Louis, MO, USA). WRWWWW (WRW4) was synthesized from AnyGen (Gwangju, Korea). Polymyxin B, pertussis toxin, SB203580 and U0126 were purchased from Calbiochem (San Diego, CA, USA). The APC-Anti-mouse CD115(c-fms) was purchased from eBioscience (San Diego, CA, USA). TAPI-1 was purchased from Enzo Life Sciences (Plymouth Meeting, PA, USA). The phospho-ERK, ERK, phospho-p38 mitogen-activated protein kinase (MAPK), p38 MAPK and β-actin antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA).
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4

Osteoclast Formation Assay Protocol

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Osteoclast assays were performed as described (31 (link), 32 (link)). Bone marrow cells (BMCs) were plated in triplicate in 96-well flat-bottom plates at a density of 3 × 104 cells/well with 10 ng/ml MCSF (R&D Systems, Minneapolis, MN). After 2 days, adherent bone marrow-derived macrophages (BMMs) were cultured in OC media supplemented with 10 ng/ml MCSF and either 5 ng/ml murine RANKL (PeproTech, Rocky Hill, NJ), 50ng/ml murine TNFα (PeproTech), 50ng/ml murine IL-6 (R&D Systems) or combined TNFα/IL-6. After 3 days, fresh cytokines were added. In some experiments, osteoprotegerin (OPG) (R&D Systems), anti-mouse IL-6 Receptor antibody (cMR16-1; Genentech, San Francisco, CA) (33 (link)) or control mouse IgG2a antibody (BioXCell, West Lebanon, NH) were added. Where indicated, cell proliferation was monitored using the alamarBlue assay according to the manufacturer’s instructions (Thermo Fisher Scientific). After 5 days, cells were fixed and stained for tartrate-resistant acid phosphatase (TRAP). Osteoclasts were quantified by counting TRAP-positive cells with 3 or more nuclei. All images were taken using a Nikon TMS-F inverted microscope at a final magnification of 100X.
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5

Isolation and Differentiation of Osteoclasts and Osteoblasts

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Marrow cells were flushed from the right femur and tibia, washed, resuspended in complete α‐MEM (containing 10% FBS, 2 mm l‐glutamine, 50 IU/ ml penicillin, and 50 mg/ml streptomycin sulphate), and seeded into 24‐well plates at 5 × 105 cells per well. After 2 h incubation, non‐adherent bone marrow cells were reseeded onto dentine discs or plastic dishes and treated with M‐CSF (25 ng/ml) and murine RANKL (50 ng/ml; Peprotech, London, UK) every 3–4 days for 9 days to induce osteoclast formation.
Adherent marrow cells were supplemented to encourage osteogenic differentiation (50 μg/ml ascorbic acid phosphate, β‐glycerophosphate 2 mM, dexamethasone 10 nm) or adipogenic differentiation (100 μm oleic acid). Media were changed every 3–4 days for 28 days. Osteoblast cultures were fixed on day 14 for alkaline phosphatase staining, using naphthol AS‐MX phosphate as a substrate and reaction of the product with Fast Violet B salt, and on day 28 for assessment of mineralization by staining with Alizarin Red S. Plates were scanned and the area and intensity of staining were quantified using ImageJ. Adipocyte cultures were also fixed on day 28 for assessment of triglyceride levels by staining with Oil‐Red‐O, which was extracted with isopropanol, and absorbance was measured at 510 nm.
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6

Mammary Gland Organoid Culture and Hormone Responses

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Mammary glands were mechanically dissociated, finely minced and digested for 1 h at 37 °C in DMEM/F-12 medium (Invitrogen) containing 2 mg/ml collagenase A (Roche Diagnostics) and 100 U/ml hyaluronidase (Sigma-Aldrich) on a shaking platform at 140 rpm. Organoids were washed in PBS and separated from single cells through four differential centrifugations (pulse to 1500 rpm in 10 ml DMEM/F12), as previously described53 (link). The pellet was then re-suspended in Phenol-free Growth Factor Reduced 100% Matrigel (BD Biosciences), and plated in eight-well coverslip bottom chambers (Fisher Scientific) and kept for 20 min at 37 °C before addition of DMEM-F12 culture media containing Transferrin/Sodium Selenite (Sigma-Aldrich), 5 µg/ml insulin (Sigma-Aldrich) and 1% Penicillin/Streptomycin (Life Technologies). After 24 h, 5 nM 4-OHT (Sigma-Aldrich) was added for 6 h. For testing hormone responses, the medium was supplemented with 200 ng/ml murine Rankl (PeproTech) or 25 ng/ml of progesterone (Sigma-Aldrich) and 50 nM 17β-estradiol (Sigma-Aldrich). Cells were cultured for 7 days.
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7

Osteoclastogenesis from Macrophages

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Macrophages can be induced to multinucleated TRAP+ OCs under incubation with RANKL (Song et al., 2019 (link)). Macrophages induced by mouse or human PBMCs were incubated in 48-well plates (3 × 104 cells per well) in complete α-MEM containing 30 ng/mL M-CSF and 50 ng/mL murine RANKL (Peprotech, USA) for 7 days to stimulate OCs differentiation. The differentiated OCs were identified by TRAP straining.
To observe the effect of M1 polarization on OC differentiation from macrophages, RAW264.7 cells were incubated in complete DMEM in the presence of LPS (100 ng/mL) or IL-4 (20 ng/mL). After 6 h, 50 ng/mL RANKL was added to induce OC differentiation.
To observe the effect of MES on OC differentiation from macrophages, RAW264.7 cells or BMMs were incubated in complete DMEM in the presence of MES (4, 8, and 16 μg/mL). After 2 h, 100 ng/mL LPS was added to induce M1 polarization for 6 h, followed by the addition of 50 ng/mL RANKL for 5–7 days to induce OC differentiation.
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8

Osteoclastic Differentiation: Pathway Inhibition

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For osteoclastic differentiation, cells were cultured in the presence of 25 ng/ml murine M-CSF and 50 ng/ml murine RANKL (for RAW264.7, from PeproTech, USA), human M-CSF and human RANKL (for PBMCs, from Peprotech, USA), and RPR. In some experiments, cells were pre-incubated for 40 mins with pharmacologic inhibitor p38/MAPK (SB203580; 10 ng/ml), ERK1/2 (PD98059; 20 μM), and JNK (SP600125; 10 ng/ml) (all from Calbiochem, La Jolla, CA) before RPR was added. In other experiments, cells were pre-incubated for 30 mins with an NFκB inhibitor (NF-κB SN50, cell-permeable inhibitor peptides; Calbiochem, San Diego, CA); caspase-3 specific inhibitor, Z-DEVD-FMK (R&D Systems, Inc., USA); caspase-9 specific inhibitor, Z-LEHD-FMK (BD Biosciences, San Diego, CA); or the general caspase inhibitor, Z-VAD-fmk (Bachem, Bubendorf, Sweden) at a concentration of 20 μM before RPR treatment.
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9

Osteoclastogenesis Assay with Trabectedin

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Marrow was flushed from the long bones of 4–8wk C57BL/6J mice into a 100mm dish in αMEM with 10% FBS and 1%PSG overnight. The next day, suspension cells were re-plated in new 100mm petri culture plastic dishes with 30 ng/mL of M-CSF, and expanded for 4–5 days until confluent. Cells were then split with ice cold PBS containing 1μM EDTA and re-plated at 60,000/cm2 in 48 or 96 well plates with 30 ng/mL of M-CSF and 50ng/mL of murine RANKL (Peprotech). Once multi-nucleated osteoclasts began forming (4–5 days), wells were treated with trabectedin or vehicle. Cells were subsequently fixed with 10% formalin, stained for TRAP (Sigma 387A), and enumerated. To assess effects of trabectedin on resorption, similar experiments were carried out on 96 well Corning osteoassay plates coated with hydroxyapatite, and hydroxyapatite dissolution was assessed. Macrophages were first grown as described above in separate plates with M-CSF and then similarly split in equal number into wells of Corning osteoassay plates and RANKL added. After osteoclastogenesis on D3–D4 in the Corning Osteoassay plate, cells were treated with trabectedin at specified doses, replaced with normal osteoclast media for an additional 24hrs after treatment, and resorption area was quantified as the percent of white area.
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10

Murine Osteoclast Generation Protocol

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Animal use was approved by the Ethics Committee at Tianjin Medical University. We used 123 C57BL/6 female mice in total (~16 wks, Animal Center of Academy of Military Medical Sciences, China). Under pathogen-free conditions, 4–5 mice were housed per cage, and they were maintained at 25 °C on a 12-h light/dark cycle, with standard rodent chow and water ad libitum.
We purchased a murine RANKL (receptor activator of nuclear factor kappa-B ligand) and murine M-CSF (macrophage-colony stimulating factor) from PeproTech, and Dulbecco’s Modified Eagle’s Medium (DMEM), Minimum Essential Medium Alpha (MEM-α), fetal bovine serum (FBS), penicillin, streptomycin, and trypsin from Invitrogen (Carlsbad, CA, USA). Other agents were obtained from Sigma (St. Louis, MO, USA) unless otherwise stated.
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