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Sodium azide

Manufactured by Santa Cruz Biotechnology
Sourced in Germany

Sodium azide is a chemical compound commonly used in laboratory settings. It serves as a preservative and inhibitor, with the primary function of preventing the growth or activity of microorganisms.

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5 protocols using sodium azide

1

Immobilizing Nematodes for Microscopy

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Worms were washed off NGM plates and immobilized in 5 mM sodium azide (Santa Cruz Biotechnology, Santa Cruz, CA, USA) in M9 buffer on glass slides. Images were collected using an A1R multiphoton confocal microscope (Nikon Instruments, Shanghai, China). At least 20 worms per strain were examined.
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2

Antibody Conjugation for CyTOF Analysis

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Antibodies (listed in Table S1 in Supplementary Material) were either pre-conjugated from the manufacturer (Fluidigm, San Francisco, CA, USA) or conjugated in-house with the appropriate metal isotopes. Between 200 and 400 µg pure mAbs (carrier-protein-free) from various manufacturers were coupled to Lanthanide from the MaxPar Antibody Labeling Kit X8 4Rxn (Fluidigm). Conjugated Abs were adjusted to 1 µg/µl in Ab Stabilizer Solution (Candor, Biosciences, Wangen, Germany), supplemented with 0.01% sodium azide (Santa Cruz Biotechnology), and stored at 4°C. Abs conjugated in-house, as well as those obtained pre-conjugated, were titrated and validated on samples that were processed identically to those used in the study.
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3

Antibody-Element Conjugation for CyTOF

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Antibody-element conjugation was performed as previously described (49 (link)). Pure (carrier-protein–free) monoclonal or polyclonal antibodies from various manufacturers were coupled to elements using MAXPAR lanthanide labeling kits (Fluidigm, San Francisco, CA), as indicated in the manufacturer’s preload method for 400 mg of antibody. The antibody-element combinations are shown in Fig. S11A for analysis of human samples and Fig. S11B for cynomolgus macaque samples. Antibody-element conjugates were adjusted to 1 mg/mL in antibody stabilizer buffer (Candor Bioscience, Wangen, Germany), supplemented with sodium azide (Santa Cruz Biotechnology) to a final concentration of 0.01%, and stored at +4°C in sterile conditions throughout the study. Antibody-element combinations were titrated and tested in CyTOF using cells from healthy humans to obtain optimal staining concentrations.
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4

Metal-Conjugated Antibody Labeling

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All the in-house conjugated monoclonal antibodies were conjugated to pre-determined metal isotopes with the MaxPar Antibody Labeling Kit X8 4Rxn (Fluidigm, San Francisco, CA, USA) according to the producer’s protocol. Directly after this step, the conjugated antibodies were diluted to 1 µg/µL in Ab Stabilizer Solution (Candor Biosciences, Wangen, Germany) supplemented with 0.01% sodium azide (Santa Cruz Biotechnology, Dallas, TX, USA) and stored at 4 °C.
The optimal concentrations of all the conjugated antibodies, including the pre-conjugated ones, were determined by titration of serial dilutions on dissociated ovarian tumor tissues, PBMCs, and OV-90 cells.
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5

Lanthanide-labeled Antibody Conjugation

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Pure (carrier-protein–free) mAbs or polyclonal Abs from various manufacturers were coupled to various elements using MAXPAR lanthanide labeling kits (Fluidigm, San Francisco, CA), as indicated in the manufacturer’s preload method for 400 µg Ab. The element–Ab combinations are shown in Table S1. The element–Ab conjugates were adjusted to 1 mg/ml in Ab stabilizer buffer (Candor Bioscience, Wangen, Germany), supplemented with sodium azide (Santa Cruz Biotechnology) to a final concentration of 0.01%, and stored at 4˚C under sterile conditions throughout the study. The element–Ab conjugates were titrated on PBMCs from healthy macaques in unstimulated and stimulated with PMA+ionomycin conditions to obtain optimal staining concentrations.
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