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Dapi staining solution

Manufactured by Thermo Fisher Scientific
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DAPI (4',6-diamidino-2-phenylindole) is a fluorescent stain that binds to DNA. It is commonly used in various applications such as cell biology, microscopy, and molecular biology to visualize and identify nucleic acids.

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11 protocols using dapi staining solution

1

Immunocytochemistry of Connexin 43 in hUCSCs

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Cx43-hUCSCs were cultured on glass cover slips in six well plates and grown to 80% confluence. Cells were washed with PBS and fixed with 40 mg/L paraformaldehyde (Sigma, USA) for 25 min, then blocked with 10% goat serum albumin (Sigma, USA) for 20 min before staining. A drop of DAPI staining solution (Lifetechnologies, USA, 1 mg/ml) was added to stain the cells for 5 min. The slips of cells were washed with PBS, and a drop of 1:100 diluted mouse anti-human Cx43 monoclonal antibody (Abcam, USA) was added and incubated for 24 h at 4°C. Samples were warmed to room temperature for 1 h, washed with PBS, 1 drop of 1:100 diluted FITC-labeled goat anti-mouse IgG (Abcam, USA) was added and incubated for 1 h at room temperature. Mouse monoclonal IgG1 (Abcam, USA) was used as isotype control as instructed by manufactures. After washing with PBS, the slips were sealed using 60% buffering glycerol (Sigma, USA) and imaged by a laser confocal microscope (Leica, Germany) with a fast scanning mode.
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2

Bee Hemolymph Extraction and Analysis

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Bees were anesthetized on ice, and hemolymph was extracted by inserting a microinjection needle (Hartenstein, Würzburg, Germany) into the proximal abdomen between the 3rd and 4th tergum25 (link),26 (link). Hemolymph (1 µl) was transferred to PCR-tubes (Biozym, Hessisch Oldendorf, Germany) containing 1 µl of DAPI-staining solution (4’,6-diamidino-2-phenylindole; 1:100 dilution, lifetechnologies, Carlsbad, California, USA) and 3 µl PBS (pH 7.4; Sigma Aldrich, St. Louis, USA). Hemocytes were counted in a counting chamber (Bürker, Carl Roth, Karlsruhe, Germany) under a phase contrast/fluorescent microscope (Leica DMIL, Leica camera DFC 420 C)25 (link),26 (link).
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3

Immunofluorescent Imaging of bFGF Expression

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Cells were cultured after attaching the barrier to a chamber slide (Nunc Lab-Tek Chamber Slide System 177429, Thermo Fisher Scientific, MA). We then removed the barrier and fixed the cells with 4% paraformaldehyde at least 48 hours after migration began. The cells were then processed with 0.25% TritonX-100, washed with PBS, and then left overnight at 4°C in order to react with anti-bFGF antibody (1:100). After this, the cells were washed once again with PBS and left for 30 minutes in room air to react with a secondary antibody (Alexa Fluor 488 goat anti-rabbit IgG). DAPI staining solution (Life Technologies, Grand Island, NY, USA) was used to stain cell nuclei and thus display the positions of the cells. After washing with PBS again, images were acquired using a fluorescence microscope.
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4

Quantifying Epithelial-Mesenchymal Transition

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2 × 104 cells/well 4T1 cells were inoculated in a 24-well culture plate with cell slides placed at the bottom in advance, so that the cells expand to 60–70% before experiment. The cells on the slides were washed by PBS for three times and then fixed with 500 μl 4% polyformaldehyde at room temperature for 15 min. After that, pre-cooled 0.2% Triton X-100 diluted in PBS was used to permeabilize the cells for 5 min. Then, the cells in each well were blocked with 500 μl goat serum containing 0.3% Triton X-100 at room temperature for an hour. After removal of the goat serum, the cells were covered with the mixed primary antibodies of E-cadherin (CST, Boston, Massachusetts, USA) and vimentin (Abcam, Cambridge, UK) overnight at 4 °C under dark conditions, and the two primary antibodies were coupled with Alexa Fluor® 594 and Alexa Fluor® 488, respectively. Afterwards, cells were washed three times using PBS, stained with DAPI staining solution (Invitrogen, Camarillo, CA, USA) for 10 min, washed, and sealed with BrightMount (Abcam, Cambridge, UK). Cells on the slides were observed by using a fluorescence confocal microscope (Zeiss, Oberkochen, Germany) with images subsequently obtained.
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5

Immunofluorescence Localization of Phosphoryl-NF-κB

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Immunofluorescence was used to determine phosphoryl-NF-κB p65 localization. GH3 cells were fixed with paraformaldehyde (v/v, 1/25) at 37°C for 10 minutes. They were then permeabilized with cold acetone at −20°C for 3 minutes. After a PBS wash (0.1 mM, pH 7.4), cells were saturated with 3% BSA in PBS for 30 minutes, and incubated with the anti-phosphoryl-NF-κB p65 antibody (diluted 1 : 100) at 4°C overnight. After another PBS wash (0.1 mM, pH 7.4), the cells were incubated with the secondary antibody for 30 minutes at room temperature. Coverslips were washed twice with PBS (0.1 mM, pH 7.4), incubated with the goat anti-mouse IgG antibody conjugated with Alexa Fluor 555 (Cell Signaling Technology, Danvers, MA, USA) for 30 minutes in the dark, incubated in 5 μM DAPI staining solution (Invitrogen) for 5 minutes, and then washed in PBS. The fluorescence was monitored using an UltraVIEW VoX confocal system (PerkinElmer, Co., Norwalk, CT, USA).
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6

Immunofluorescence Assay for E-cadherin and Vimentin

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4T1 cells were inoculated into a 24-well culture plate with pre-placed cell slides. The cells were treated with 4% paraformaldehyde for 15 min and then placed in 0.2% Triton X-100 at 4 °C for 5 min. Non-specific antibodies were blocked with goat serum containing 0.3% Triton X-100 (room temperature, 1 h). The mixed primary antibodies, including E-cadherin (CST, Boston, Massachusetts, USA) and vimentin (Abcam, Cambridge, UK), were placed over the slides and incubated for 12 h at 4 °C in a light-proof environment. Alexa Fluor 594 and Alexa Fluor 488 were coupled to the above two primary antibodies and the nuclei were stained with DAPI staining solution (Invitrogen, Camarillo, CA, USA). The slides were sealed and observed under a fluorescence confocal microscope (Zeiss, Oberkochen, Germany) and photographed.
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7

Evaluation of Nano-Formulations for Cancer Treatment

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Dopamine hydrochloride was purchased from J&K Scientific Co., Ltd. (Beijing China). Ammonium hydroxide and anhydrous ethanol were purchased from Beijing Chemical Reagent Company (Beijing, China). ICG and PTX were purchased from Sigma-Aldrich (St. Louis, USA). DAPI Staining Solution was provided by Invitrogen (USA). Phosphate-buffered saline (PBS), 4% paraformaldehyde, Roswell Park Memorial Institute (RPMI-1640), and penicillin-streptomycin were purchased from Solebao Biotechnology Co., Ltd. (Beijing, China). Fetal bovine serum was purchased from Zhejiang Tianhang Biotechnology Co., Ltd (Hangzhou, China). Cell Counting Kit-8 (CCK-8) was purchased from Dojindo Molecular Technologies (Kumamoto Techno, Japan). The MDA-MB-231 cell line was obtained from the American Type Culture Collection (ATCC, Manassas, USA).
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8

Immunofluorescent Staining of Glioma Cells

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Cells were rinsed three times in PBS and fixed with cold methanol, washed thoroughly with PBS, incubated with DAPI staining solution (1 µg/mL, Thermo Fisher Scientific, Waltham, MA, USA) for 30 minutes (min) and rinsed three times with PBS, followed by viewing using a fluorescence microscope (Olympus, Tokyo, Japan).
For the immunofluorescent staining, the human glioma cells U87MG and M059J were cultured on the coverslips and treated with CA (25 µM, 50 µM) for 24 h, Subsequently, the cells on the coverslips were fixed with 4% paraformaldehyde (15 min at 4 °C), blocked with 1% BSA (1 h, RT), and incubated with primary antibody, rabbit anti-GFAP antibody (1:200 dilution; Proteintech, IL, USA), or mouse anti TUBB3-antibody (Tuj1, 1:200 dilution; Proteintech, IL, USA) for overnight at 4 °C. The coverslips were then washed 3 times with PBS and stained with a Cy3-conjugated anti-mouse secondary antibody or an Alexa Fluor 488-conjugated anti-rabbit secondary antibody (1:200 dilution; Thermo Fisher Scientific, Waltham, MA, USA). Cell nuclei were counterstained with DAPI (1 µg/mL, Thermo Fisher Scientific, Waltham, MA, USA). Confocal images were taken using a fluorescent microscope (Nikon Eclipse CI, Japan) and fluorescence pictures were photographed using the Nikon DS-U3 system (Japan).
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9

Fluorescent In Situ Hybridization for CircCDR1as and miR-135b

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FISH was performed using specific probes of CircCDR1as and miR‐135b. The FAM‐labeled probe was specific for CircCDR1as while the cy5‐labeled probe was specific for miR‐135b. The slides were rinsed with PBS, fixed with 4% paraformaldehyde at room temperature, treated with protease K (RNA enzyme treatment was carried out in the control experiment to verify the specificity of the signal), and hybridized in pre‐hybridizing solution with probe at 42°C overnight. After PBS containing 0.1% Tween‐20 (PBST) washing, the nucleus was stained with 4′, 6‐diamidino‐2‐phenylindole (DAPI) staining solution (1:800, Thermo Fisher Scientific, Rockford, IL, USA) for 5 min, followed by three washes using PBST (3 min/time). The slides were sealed with anti‐fade mounting medium, then photographed and observed in five randomly selected visual fields under a fluorescence microscope (Olympus Optical Co., Ltd., Tokyo, Japan). All images were acquired on a Zeiss LSM880 NLO confocal microscope system (Leica Microsystems, Wetzlar, Germany).
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10

Autophagy Induction in HUVECs

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HUVECs (5 × 105 cells/well) were added to a 6-well plate containing cell slides. After 12 h, the 6-well plate was removed to confirm that the cells had grown well. Then, the medium was discarded, 1.2 mL of fresh fetal bovine serum free medium was added to each well, and a viral solution at a MOI value of 10 was added into the plate, and wells with no virus were used as a control group. Approximately 24 h after infection, the virus-containing medium was removed, and 2 mL of 10% fetal bovine serum medium was added to each well. After 24 h of cultivation, the HUVECs were incubated in the appropriate reagents for a specific amount of time. Next, the HUVECs were fixed with 4% paraformaldehyde, and then cells were stained with a 50 μL of DAPI staining solution (62248, ThermoFisher, Waltham, USA) in the dark for 5 min. The HUVECs were then washed with PBS three times, and the slides with HUVECs were prepared and covered inward onto the microslides. The changes in LC3B fluorescence were observed under a fluorescence microscope (Observer.Z1, Zeiss, Germany) according to previous reports [28] (link), [29] (link).
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