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10 protocols using ab97265

1

Deyolking Zebrafish Larvae for Western Blot Analysis

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Embryos were deyolked in batches as outlined in Link et al. [20 (link)]. Briefly, 15–20 larvae were placed in a 1.5ml Eppendorf tube. Egg water was removed and 1 ml deyolk buffer (55 mM NaCl, 1.8 mM KCl, 1.25 mM NaHCO3) was added. Larvae were pipetted through a p200 pipette tip to disrupt the yolk, and then agitated at 1100 RPM for 5 minutes. They were then centrifuged at 300g for 30 seconds. The larvae were then washed twice by removing the deyolk buffer, adding 1mL wash buffer (110 mM NaCl, 3.5 mM KCl, 2.7 mM CaCl2, 10 mM Tris-Cl pH8.5), agitating at 1100 RPM for for 2 minutes, and centrifuging at 300g for 1 minute. After washes, all liquid was removed, and 4 ul 1x SDS buffer (5% 2-Mercapto Ethanol, 2% SDS, 5% glycerol, 0.05 mM Tris pH 6.8, 0.017% Bromophenol Blue in water) per larva was added. The samples were homogenized and 6 larval equivalents of protein isolate was assayed. The blots were labeled with a rabbit-anti-pde6c polyclonal antibody (Abcam ab198744) and a mouse-anti-alpha tubulin monoclonal antibody (Sigma T6199). A HRP-conjugated goat-anti-rabbit polyclonal antibody (Abcam ab6721) and a HRP-conjugated goat-anti-mouse polyclonal antibody (Abcam ab97265) were used as secondary antibodies. The HRP label was imaged using a SuperSignal (TM) West Pico PLUS Chemiluminsecent Substrate (Thermo Scientific 34579) and an Azure c600 imaging system (Azure Biosystems).
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2

Western Blot Analysis of Cell Signaling Proteins

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Cells were first trypsinized and resuspended in HLB buffer with protease inhibitors. After homogenization, cells were mixed with 1× SDS lysis buffer and boiled. Equal amount of protein from each sample was then separated using electrophoresis and transferred into nitrocellulose membranes. Membranes were then incubated with 5% skimmed milk, followed by overnight incubation with β‐catenin primary antibody (1:500, ab32572, Abcam), STAT3 primary antibody (1:1000, ab119352, Abcam), WIF‐1 primary antibody (1:1000, ab186845, Abcam), E‐cadherin primary antibody (1:1000, ab1416, Abcam), N‐cadherin primary antibody (1:1000, ab18203, Abcam), or GAPDH primary antibody (1:2000, ab9485, Abcam). This was followed by incubation with secondary antibody (1:2000, ab6721 or ab97265, Abcam, USA) for 2 hours. The protein bands of interest were visualized by an ECL Advanced Western Blot Detection Kit.
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3

ELISA-based Quantification of sE2 Constructs

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Serial 6.25 fold dilutions of each sE2 supernatant beginning with a 1 to 40 dilution were immobilized onto ELISA wells pre-coated with 500 ng Galanthus nivalis lectin (Sigma-Aldrich) and blocked with PBS containing 0.5% Tween 20, 1% nonfat dry milk, and 1% goat serum. Wells were probed with 0.5 μg of a mouse monoclonal anti-6x His-tag antibody (ab18184, Abcam) and quantified using a HRP-conjugated goat anti-mouse IgG secondary antibody (ab97265, Abcam). The EC50 for each sE2 construct was calculated by nonlinear regression analysis and fold differences in EC50 used to normalize sE2 concentration in subsequent experiments.
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4

VZV-Specific Antibody Measurement in Mice and Guinea Pigs

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VZV‐specific total immunoglobulin G (IgG), IgG1, and IgG2a in mouse serum and total IgG, IgG1, and IgG2 in guinea pig serum were measured by eELISA. The 96‐well plates (Nunc MaxisorpTM; Thermo Fisher Scientific) were coated with 50 ng well−1 VZV gE for mice and 1000 PFU well−1 VZV for guinea pigs and incubated overnight at 4°C. The wells were then blocked with 200 μL of 5% (v/v) skim milk for 1 hour at room temperature (RT). Diluted serum samples and VZV gE Ab (No. 127‐10031; RayBiotech, Inc, Peachtree Corners, GA) were added to the plates and incubated for 2 hours at RT. The wells were then washed three times with 200 μL phosphate‐buffered saline (PBS) mixed with 0.05% (v/v) Tween 20 (PBST). The following antibodies were then added: anti‐mouse IgG (ab97265; Abcam, Cambridge, UK), IgG1 (ab97240; Abcam), and IgG2a Ab (ab97245; Abcam) or anti‐guinea pig IgG (ab9608; Abcam), IgG1 (ABIN457757; Antibodies, Cambridge, UK), and IgG2 Ab (GAGp/IgG2/PO; Nordic MUbio, Susteren, The Netherlands). The mixtures were then incubated for 1 hour at 37°C. After washing, 3,3′,5′5′‐tetramethylbenzidine (TMB) substrate was added to the wells and the mixtures were incubated for 15 minutes. A stop solution was then added to halt the reaction. Optical densities were measured at 450 nm in a microplate reader.
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5

VLDLR Protein Expression Analysis

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Frozen liver tissue, 20–25 mg, was homogenized in 500 μL RIPA buffer supplemented with protease inhibitor cocktail (Sigma), centrifuged at 14,000 rpm for 10 min at 4°C and supernatant collected. For Western blot analysis equal protein amounts were separated by SDS-PAGE and transferred onto a membrane. The membrane was blocked for 1 hour in phosphate-buffered saline PBS-T (0.1%) with 5% milk, followed by immunostaining with optimized dilutions of murine VLDLR primary antibody (Origene TA309928) in 5% milk in PBS-T overnight at 4°C. Then the membrane was incubated with a secondary antibody (Abcam, ab97265) in 5% milk in PBS-T for 1 hour at room temperature.
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6

Western Blot Protein Expression Analysis

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Cells were lysed in the RIPA lysis buffer [20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% NP-40, 1% sodium deoxycholate and 1 mM AEBSF]. Equal amounts of samples were subjected to a Tris-Glycine Gel (Invitrogen, XP0012C) in a Mini Gel Tank (Invitrogen, A25977). The resolved proteins were transferred onto a nitrocellulose membrane (Amersham Protran 0.2 μm, 10600006) using a wet electroblotting system (Bio-Rad Mini Protean II Cell) followed by immunoblotting. 5% non-fat dry milk in 1× TBS-T (0.1% Tween-20) was used for blocking at room temperature for 1 h.
Primary antibodies were applied overnight at 4°C as follows: LRP6, rabbit, Abcam, ab134146, 1:1,000; Cyclin D1, rabbit, Abcam, ab16663, 1:2,500; alpha-Tubulin, mouse, Merck Millipore, CP06, 1:10000; HSP90, rabbit, Cell Signaling Technology, #4874S, 1:1,000; GAPDH, mouse, Santa Cruz biotechnology, sc-32233, 1:10000.
Secondary antibodies: Goat anti-mouse IgG (HRP), Abcam, ab97265, 1:10000; Goat anti-rabbit IgG (HRP) Abcam, ab6721, 1:10000.
Signals were detected by SuperSignal West Dura (Life Technologies, 34075) with an Optimax 2010 X-Ray Film Processor (PROTECT) or using the BioRad ChemiDoc MP Imaging System. The results were quantified using ImageJ, with one-way ANOVA as a statistical analysis.
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7

Quantification of TAMs in Tumor and Peritumoral Tissues

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TMAs have been constructed for this study. Briefly, two cores were taken from each representative tumor tissue and peritumoral tissue (at least 50mm away from the tumor border). Then, sixteen TMAs sections with 494 tumor tissues (988 cores, 2mm each core) and 237 peritumoral tissues (474 cores, 2mm each core) were constructed (in collaboration with Shanghai Biochip Company Ltd., Shanghai, China).
Routine IHC method was performed for the staining of TAMs. The primary antibody was mouse anti-human monoclonal antibody against macrophages (ab22506 [MAC387], Abcam, UK, dilution 1/100), with corresponding horseradish peroxidase (HRP) conjugated secondary antibody (ab97265, Abcam, UK, dilution 1/300). The reaction products were visualized with diaminobenzidine (DAB, DAKO, Denmark). Then the slides were evaluated by two senior pathologists, who were blinded to the patients’ clinical features and outcomes. A consensus was achieved using a multi-headed microscope in case of discrepancy. In brief, one TMA core with at least 4 standard-compliant vision fields (magnification, ×200) per patient was considered to be adequate, with no focus on hotspots.
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8

Postoperative Nerve Tissue Analysis

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On postoperative day 30, the nerve samples (n = 6 per group) were dehydrated in alcohol, embedded in paraffin, and cut lengthwise into 4-μm-thick sections. After the sections were incubated in 3% hydrogen peroxide for 25 minutes, nonspecific sites were blocked with 3% albumin bovine serum for 30 minutes. Next, the sections were separately incubated with mixtures of phosphatebuffered saline and primary antibodies against anti-neurofilament 200 (NF-200) (1:200, SAB4200747, Sigma), anti-α-smooth muscle actin (α-SMA) (1:200, ab5694, Abcam), and anti-sigma-1 receptor protein (S1R) (1:400, 15168-1-AP, Proteintech) overnight at 4°C. Goat antimouse (ab97265, Abcam) was selected as the secondary antibody for NF-200, and goat anti-rat (ab205720, Abcam) was selected for α-SMA and S1R. Six images (×400 magnification) were randomly assessed in each rat using the immunohistochemistry (IHC) toolbox plugin 19 of ImageJ. The percentage mean positive area was used (mean positive area ratio = positive area pixels/total image area pixels × 100%).
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9

FN Cell-Binding Motif Exposure Quantification

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The exposure ratio of the cell-binding RGD motif in the surface-adsorbed FN was investigated via ELISA. After 1 h incubation in 10 μg mL -1 FN solution at 37 °C, the substrates were equipped onto the ProPlate® slide module (16 round wells) and blocked with Blocking One (Nacalai Tesque, Inc.) solution for 1 h at room temperature. Then the substrates were reacted in turn with 0.5 μg mL -1 of anti-fibronectin (specifically at the cell-binding site) antibody (ab64713, Abcam) for 1 h and 2 μg mL -1 of HRP-tagged goat anti-mouse IgG-Fc (ab97265, Abcam) for 2 h. Finally, the substrates were reacted with TMB One Component HRP Microwell Substrate (SurModics) for 5 min, and the absorbance at 450 nm was measured. The substrates were rinsed 5 times with 0.05 wt% Tween® 20 (Sigma-Aldrich) in PBS between all the steps.
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10

Comparison of Seven Antibody Protocols

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Seven antibodies were tested: Mab 8/5 (Dresden Panel), Mip 1 (MBS855187, MyBiosource, San Diego, CA), Mip 2 (MBS852400, MyBiosource), Omp 28 (MBS852640, MyBiosource), LP3IIG2 (ATCC HB-8472), OBT (OBT0943P, AbDserotec, Bio-Rad, Hercules, CA), SeraCare, Milford, MA) . Secondary antibodies were used with nonconjugated antibodies. Anti-mouse conjugated with horseradish peroxidase (HRP) (ab97265, Abcam, Cambridge, UK) was used to detect Mab 8/5, Mip 1, Mip 2, and Omp 28; anti-rabbit HRP (ab97200, Abcam) was used to detect KPL; and anti-mouse conjugated with fluorescein-5-isothiocyanate (FITC) (F0257, Sigma-Aldrich Co., St. Louis, MO) was used in the immunofluorescence assay (IFA) test.
LP3IIG2 was obtained from the hybrid cell line HB-8472 (ATCC). This hybridoma was cultured, purified, and HRP conjugated by the Antibody Service of Universitat Autònoma of Barcelona.
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