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8 protocols using cd45r b220 ra3 6b2

1

Multiparameter Immunohistochemical Analysis

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Formalin‐fixed tissue sections were stained using Vision Biosystems BondMax II and antibodies: CD4 (EPR19514), CD21 (EP3093), c‐MYC (Y69), CD3 (EPR4517), Ki67 (SP6), γH2AX (HRP conjugated, EP854(2)Y; all Abcam), β‐catenin (C14, BD Biosciences), BCL6 (C‐19, SantaCruz), and B220/CD45R (RA3‐6B2, BD) and counterstained with hematoxylin. Slides were scanned using the Aperio AT2 system, visualized, and quantified using QuPath (0.2.2).
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2

Monoclonal Antibodies for Bone Marrow B Cell Analysis

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The following monoclonal antibodies were used for flow-cytometric analysis of mouse bone marrow cells: B220/CD45R (RA3-6B2; BD; 1:200), CD19 (1D3; BD; 1:300), CD25/IL-2Rα (PC61; BD Pharmingen; 1:500), CD117/Kit (2B8; Invitrogen; 1:1000), IgD (11-26c, Invitrogen; 1:2000), IgM (II/41, Invitrogen; 1:300), IgMa (MA-69, BioLegend; 1:1000), and IgMb (AF6-78, BioLegend; 1:1000). The following antibodies were used for immunoblot or immuno-precipitation analyses: anti-Wapl (rabbit polyclonal Ab, A960; Peters laboratory), anti-Tbp (mouse mAb clone 3TF1-3G3; Active Motif), and anti-H3K27ac (rabbit polyclonal Ab, ab4729; Abcam).
B cell types in the bone marrow were defined as CD19+B220+IgMIgDKit+CD25 pro-B cells, CD19+B220+IgMIgDKitCD25+ pre-B cells, and CD19+B220+IgMaIgDKit immature B cells. Flow-cytometric experiments and cell sorting were performed on LSR Fortessa (BD Biosciences) and FACSAria III (BD Biosciences) machines, respectively, using the FACS Diva (8.0) software. Flowjo software (Treestar) was used for data analysis.
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3

Germinal Center Immunostaining in Frozen Mouse Spleen

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Spleens from immunized mice were frozen in optimal cutting temperature (OCT) compound (Tissue-Tek cryomold and OCT gel compound, Sakura Finetek USA, Torrance CA) and cryosectioned in 5μm slices. Cryosections were fixed in cold acetone for 10 min at −20°C, washed with PBS, and then solubilized in 0.5% Tween-20 in PBS. After further washing in PBS, endogenous biotin and streptavidin binding sites were blocked according to manufacturer’s instructions (SP-2002, Vector Laboratories, Burlingame CA). For germinal center detection, sections were sequentially incubated with the following primary antibodies for 30 min at RT: CD3-FITC (17A2, eBioscience, San Diego CA, 1:100); CD45R/B220 (RA3–6B2, BD, Franklin Lakes NJ, 1:200); peanut agglutinin-biotin (B-1075, Vector Laboratories, Burlingame CA, 1:100). Slides were washed with 0.1% Tween-20 in PBS, and then incubated with secondary antibodies for 30 min at room temperature (AF555-goat anti-rat IgG (Invitrogen, Carlsbad CA, 1:500); AF647-sAv (Invitrogen, Carlsbad CA, 1:200)). After washing, slides were mounted with Vectashield Mounting Medium (H-1000, Vector Laboratories, Burlingame CA). Images were acquired on a Zeiss LSM 700 Confocal Microscope (magnification 200x) and pictures processed using Zen (Zeiss, Oberkochen Germany) and QuPath software.
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4

Flow Cytometric Analysis of Dendritic Cells

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The cell-surface markers expressed by the purified CD11c+PDCA-1+ DCs were analyzed by flow cytometry using the methods we described previously [23] (link), [24] (link) and the following panel of dye-conjugated monoclonal antibodies purchased from BD Biosciences (San Jose, CA): CD8α (clone 53-6.7), CD11b (clone M1/70), CD11c (clone HL3); CD40 (clone MH40-3), CD45R/B220 (RA3-6B2), CD80 (clone 16-10A1), CD86 (clone GL-1) and HLA-DR (clone L243). All staining was conducted in the presence of saturating concentrations of anti-CD16/CD32 (Fcγ III/II receptor-block, clone 2.4G2); appropriate rat, hamster, and mouse IgG isotype matched controls were included in the analyses to correct for non-specific staining. Flow cytometric analyses were performed using a Becton Dickinson LSR-II flow cytometer (BD Biosciences, San Jose, California) and analyzed using FlowJo software (Tree Star, Inc., Ashland, OR).
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5

Immunological Antibody Staining for Flow Cytometry

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The following antibodies were used for immunofluorescence and immunohistochemistry: CD45R/B220 (RA3-6B2, BD Pharmingen), CD11c (N418, eBioscience), Fc receptor block;anti-CD16/CD32 (2.4G2, BD Pharmingen), CD3 (F7.2.38, Agilent Technologies), von Willebrand factor (vWF) (A0082, Dako). The following antibodies were used for flow cytometry: CD45.1 (A20, eBioscience), CD4 (RM4-5, eBioscience), IL-17A (TC11-18H10, BD Pharmingen), FoxP3 (FJK-16s, eBioscience), RoRγt (Q31-378, BD Pharmingen), CD44 (IM7, eBioscience), IFNγ (XMG1.2, BD Pharmingen), CD8α (53-6.7, eBioscience), γδ-TCR (eBioGL3, eBioscience). Anti-mCD4 (GK1.5, BioXCell) was used for in vivo CD4+ T-cell depletion.
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6

Isolation and Analysis of Intestinal Immune Cells

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MLN were processed into single cell suspensions and colons were digested and LP lymphocytes were isolated as described.24 For experiments requiring detection of intracellular antigens, cell suspensions were cultured in the presence of Golgistop (5 μL/mL; BD), phorbol myristate acetate (50 ng/mL; Sigma) and ionomycin (1mg/mL Sigma). Cells were then permeabilized and fixed using an intracellular staining kit (eBioscience). The following antibodies were used: CD4 (RM4-5, eBioscience), CD8α (53–6.72, Biolegend), CD11b (M1/70, Biolegend), CD45R/B220 (RA3-6B2, BD Pharmingen), CX3CR1 (SA011F11, Biolegend), CD11c (HL3, BD), MHCII (M5/114, Biolegend), CD24 (M1/69, Biolegend), CD64 (X54-5/7.1, Biolegend), CD103a (2E7, Biolegend), IL-17A (TC11-18H10, Biolegend), Foxp3 (FJK-16s, eBioscience) and IFNγ (XMG1.2, BD Pharmingen).
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7

Murine Colonic Lamina Propria Immune Cell Analysis

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Colonic lamina propria cells were incubated with anti-mouse CD16/CD32 antibody (93; BioLegend; CA, USA) to block Fc receptors and then stained using antibodies conjugated with Brilliant Violet 421, BV510 (BV), Alexa Fluor 488, phycoerythrin (PE), PE-CF594, PE-Cy7, allophycocyanin (APC), or APC-Cy7. CD45 (30-F11), F4/80 (BM8), Siglec-F (E50-2440), CD4 (GK1.5), CD11c (6D5), CD45R/B220 (RA3-6B2), Ly6C (AL-21), and TCRβ (H57-597) antibodies were obtained from BioLegend. CD11b (M1/70) and CD4 (GK1.5) antibodies were obtained from (Thermo Fisher Scientific). Ly6G (1A8), Siglec-F (E50-2440), Ly6C (AL-21), and CD45R/B220 (RA3-6B2) antibodies were obtained from BD Biosciences. The compound, 7-AAD (BioLegend) or Fixable Viability Stain 780 (BD Biosciences) was added to the cell suspension to label dead cells. The stained cells were analyzed using MACSQuant (Miltenyi Biotec, Bergisch Gladbach, Germany).
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8

Germinal Center Detection in Immunized Mouse Spleens

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Spleens from immunized mice were froZen in optimal cutting temperature (OCT) compound (Tissue-Tek cryomold and OCT gel compound, Sakura Finetek USA, Torrance CA) and cryosectioned in 5μm slices. Cryosections were fixed in cold acetone for 10 min at -20°C, washed with PBS, and then solubilized in 0.5% Tween-20 in PBS. After further washing in PBS, endogenous biotin and streptavidin binding sites were blocked according to manufacturer's instructions (SP-2002, Vector Laboratories, Burlingame CA). For germinal center detection, sections were sequentially incubated with the following primary antibodies for 30 min at RT: CD3-FITC (17A2, eBioscience, San Diego CA, 1:100); CD45R/B220 (RA3-6B2, BD, Franklin Lakes NJ, 1:200); peanut agglutinin-biotin (B-1075, Vector Laboratories, Burlingame CA, 1:100). Slides were washed with 0.1% Tween-20 in PBS, and then incubated with secondary antibodies for 30 min at room temperature (AF555-goat anti-rat IgG (Invitrogen, Carlsbad CA, 1:500); AF647-sAv (Invitrogen, Carlsbad CA, 1:200)). After washing, slides were mounted with Vectashield Mounting Medium (H-1000, Vector Laboratories, Burlingame CA). Images were acquired on a Zeiss LSM 700 Confocal Microscope (magnification 200x) and pictures processed using Zen (Zeiss, Oberkochen Germany) and QuPath software.
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