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19 protocols using vectashield mounting medium

1

Immunofluorescent Analysis of ASC and Caspase-1

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Cells were fixed with 4% paraformaldehyde for 15 min and permeabilized with 0.1% Triton-X 100 for 10 min. Cells were incubated with specific primary antibody against ASC (sc-22514-R, Santa Cruz, CA, United States) and caspase-1 (sc-56036, Santa Cruz, CA, United States) overnight, washed with PBS to remove the excessive primary antibodies, and then incubated with fluorescent secondary antibodies. Samples were counterstained with DAPI (Invitrogen, Carlsbad, CA, United States) to visualize the nuclei. After washing, the sections were mounted in VECTASHIELD® mounting medium (Invitrogen, Carlsbad, CA, United States), examined under a confocal laser microscope (Leica, Exton, PA, United States), and analyzed using the Imaris 8 Image Analysis Software (Oxford Instruments, Oxford, United Kingdom).
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2

Wound Tissue Cryosectioning and Imaging

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Seven days after wound induction, wounds were collected and frozen in isopentane under liquid nitrogen. The reactions were performed using 5 μm cryosections as described (33 (link)). The sections were mounted with VECTASHIELD Mounting Medium (Invitrogen, Waltham, Massachusetts, EUA) and visualized with a fluorescence microscope (Zeiss-Axio Scope.A1) using a 20 x objective.
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3

Immunofluorescent Analysis of HMGB1 and DRP1

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For the protein expression analysis of HMGB1 and DRP1, 5 µm-thick paraffin tissue sections or cultured cells were incubated in a blocking buffer (0.5% bovine serum albumin and 0.05% Tween 20 in PBS) for 1 h at room temperature (RT). Then, the sections or cells were incubated with primary antibodies against HMGB1 (1:200) and DRP1 (1:100) for 1 h, stained, and visualized using a fluorescence detection system (Ventana Medical Systems, Invitrogen). Samples were counterstained with 4′,6-diamidino-2-phenylindole (DAPI; Invitrogen) to visualize cell nuclei. After washing, sections were mounted in VECTASHIELD mounting medium (Invitrogen) and examined under a confocal laser microscope (Leica, Miami, FL, USA).
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4

Immunohistochemical Analysis of Dlx2, Osteocalcin, and Msx2

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The condyles of the P90 control and Wnt1Cre::iZEG-Dlx2 mice were demineralized and embedded in paraffin, and sectioned at a thickness of 5 µm. The immunohistochemistry process was performed as previously described (11 (link),16 (link)). Briefly, antigen retrieval for slides was performed with a bone antigen restoration liquid kit (Sunteam Biotech Co., Ltd., China) and subsequently, the samples were blocked for 60 min with 3% bovine serum albumin in phosphate-buffered saline (PBS) containing 0.2% Triton-X-100. Subsequently, the sections were incubated with anti-Dlx2 (1:100; Abcam, Cambridge, UK; cat. no. ab18188), anti-osteocalcin (OCN; 1:200; Abcam; cat. no. ab93876) or anti-msh homeobox 2 (Msx2; 1:100; Abcam; cat. no. ab69058) overnight at 4°C. Following incubation, donkey anti-rabbit secondary antibodies (AlexaFluor 488-conjugated; Thermo Fisher Scientific, Inc.; cat. no. A21206) were diluted in PBS (1:300) and incubated for 60 min at room temperature. Finally, the slides were mounted with Vectashield mounting medium containing 4′,6-diamidino-2-phenylindole (Invitrogen; Thermo Fisher Scientific, Inc.) was used to mount the cover-slips. Images were capture under a fluorescence microscope.
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5

Measuring Global RNA Transcription in IVF Embryos

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Global RNA transcription was measured by EU incorporation to nascent RNA. IVF embryos were cultured in KSOM medium containing 2 mM 5-ethynyl uridine (EU) during 30-32 hpi. As a control, embryos were incubated in KSOM medium without EU supplementation. These embryos were immediately fixed with 4% paraformaldehyde in PBS for 20 min, and then permeabilized with 0.5% Triton X-100 in PBS containing 3% BSA (PBS-BSA) for 20 min at room temperature. After permeabilization, embryos were washed and incubated in the Click-iT reaction cocktail for 30 min according to the vendor's protocol (Thermo Fisher Scientific, C10329). After another washing steps, the samples were mounted on glass slides in VECTASHIELD mounting medium containing 4 mg/ml 4', 6-diamidino-2-phenylindole (DAPI) (Invitrogen, D1306). The fluorescence signals were observed using a confocal microscope (LSM800, Carl Zeiss, Germany), equipped with a laser module (405/488/561/640 nm) and GaAsP detector, using the same contrast, brightness, exposure, and Z-slice thickness settings (2 mm).
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6

Immunocytochemical Staining of Transfected Cells

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For immunocytochemistry, the cells were split onto cover slips (Cat. No. 12546, Fisher Scientific, Waltham MA) that were coated with Poly-D-Lysine (Cat. No. P8920, Sigma Aldrich, St. Louis, MO) the day before transfection. At 24 and 48 hours, the cells were fixed in 4% paraformaldehyde for 10 minutes. Following a brief 1× PBS wash, the fixed cells were permeabilized in ice-cold methanol for 5 minutes. After another wash in PBS-T, a 20% normal goat serum solution in PBS-T was used as means to block the cells for 30 minutes at room temperature. The cells were then incubated for 24 hours at 4°C in the primary antibody, C4F6 (Cat. No. MM-0070-2, Medimabs, Quebec, CA, purchased 2014), which was diluted in a 10% goat serum/PBS-T solution. The cells were washed in PBS-T prior to the addition of goat anti-mouse AlexaFlour-568 (Cat. No. A11004, Invitrogen/ThermoFisher, purchased 2014) secondary antibody and DAPI reagent in dilutions of 1:2000 each in a solution of 10% normal goat serum /PBS-T. The cells were finally washed with PBS and mounted onto glass slides (Cat. No. 1255015, Thermo/Fisher, purchased 2014) using Vectashield mounting medium (Cat. No. H1200, Vector Laboratories, purchased 2014). Pictures were taken at 20× magnification on an Olympus BX60 epifluorescence microscope.
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7

Immunofluorescence Analysis of Zona Pellucida-free Embryos

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Zonae pellucidae were removed by a brief incubation with acidic Tyrode’s solution, and zona pellucida-free embryos were washed in phosphate-buffered saline (PBS), fixed in freshly prepared 2% paraformaldehyde for 20 min at room temperature, and washed twice in PBS. Afterward, the embryos were permeabilized in 0.5% Triton X-100 for 25 min, washed three times in PBS, and then blocked with 5% donkey serum for 1 h. Samples were incubated with SIN3A antibody (Cat #3479, Abcam), TRF2 antibody (Cat #ab108997, Abcam), or rabbit polyclonal anti-γH2AX antibody (Cat #80312, Cell Signaling Technology) diluted 1: 100 in blocking solution at 4°C overnight, washed three times, incubated with FITC donkey anti-mouse IgG or FITC anti-rabbit IgG for 1 h at room temperature in the dark, washed again, and finally mounted with VECTASHIELD mounting medium and exposed to 0.5 μg/mL 4, 6-diamidino-2-phenylindole (DAPI, 1 μg/mL, Thermo Fisher Scientific). Images were captured with a ZEISS microscope equipped with fluorescence (Celldiscoverer 7 with LSM900).
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8

Immunofluorescence Staining of Transfected Cells

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Cells were grown on coverslips to ∼50% confluence and transfected with the respective plasmid. Forty-eight hours posttransfection, the cells were fixed with methanol and washed with PBS repeatedly. Cells were made permeable using 0.2% Triton X-100 in PBS for 15 min at 4°C and then washed with PBS. Cells were then incubated with the respective primary and secondary antibody at 4°C in a humified chamber sequentially. The coverslips were then washed and stained with DAPI (4′,6-diamidino-2-phenylindole) and mounted on slides using Vectashield mounting medium (ThermoFisher catalog number NC9265087). Images were taken using a Zeiss LSM 700 confocal laser-scanning microscope and analyzed using ZEN lite software (48 (link)).
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9

Quantification of Micronuclei and Chromatin Bridges

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For the quantification of micronuclei, cells were treated with 2 μg ml−1 Cytochalasin B on poly-L-lysine-coated coverslips (BD Bioscience) for 12 h before being fixed and mounted with Vectashield mounting medium with DAPI (Vector laboratories). Micronuclei in binucleated cells were scored using the micronucleus assay21 (link). For the quantification of chromatin bridges and binucleation, cells were harvested following asynchronous growth incubated on Polysine (Thermo Scientific) slides, fixed and mounted with Vectashield mounting medium with DAPI. Slides were scored using a Nikon Ellipse Microscope. Binucleation was defined and scored as in the micronucleus assay.
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10

Whole-mount Tissue Staining Protocol

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Whole-mount tissues were stained according to our previously published methods47 (link)–49 (link). Briefly, tissues were fixed at 4 °C with 4% PFA in PBS overnight, washed with PBS, and cut into small pieces. Tissues were digested with proteinase K (20 mM) and permeabilized with 100% methanol. Samples were blocked overnight with a PBS-0.1% Triton X-100 solution containing 3% milk, and incubated at 4 °C overnight with primary antibodies against CD31 (1:100, Cat. No. AF3628, R&D) and Perilipin (1:200, Cat. No. 20R-PP004, Fitzgerald Industries). After washing with PBS, samples were blocked with 3% milk, and incubated at RT with fluorescent-conjugated secondary antibodies (1:300, Thermo Fisher Scientific Inc.) for 2 h. After rigorous rinsing, samples were mounted with a Vectashield mounting medium (Cat. No. H-1000, Vector Laboratories). Fluorescent signals were examined under a confocal microscope (LSM510 Confocal, Zeiss).
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