The largest database of trusted experimental protocols

Geneamp 5700 sequence detection system software

Manufactured by Thermo Fisher Scientific

The GeneAmp 5700 Sequence Detection System software is a real-time PCR data analysis software. It is designed to analyze and manage data generated by the GeneAmp 5700 Sequence Detection System hardware platform.

Automatically generated - may contain errors

2 protocols using geneamp 5700 sequence detection system software

1

Quantitative RT-PCR for Cytokine Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from decidua with the Rneasy Mini Kits (QIAGEN, Valencia, CA) according to the manufacturer’s instructions. For qRT-PCR, amplification was performed in an ABI5700 (PE Biosystems, Foster City, CA) using the SYBR Green kit (QuantiTect SYBR Green PCR; QIAGEN). The primers were designed from the target human mRNA sequence using Primer Express software (Applied Biosystems). Each primer was entered into an NCBI BLAST search to ensure that it was specific for the target mRNA transcription. The primer sequences are the following: IL-17 forward 5’-CCG GAC TGT GAT GGT CAA-3′, reverse 5′- CTC ATT GCG GTG GAG ATT-3′; IL-10 forward 5’-GAC TTT AAG GGT TAC CTG GGT TG-3′, reverse 5’-TCA CAT GCG CCT TGA TGT CTG-3′; TGF-β1 forward 5’-CAA TTC CTG GCG ATA CCT CAG, reverse 5’-GCA CAA CTC CGG TGA CAT CAA-3′. The housekeeping gene β-actin primers, forward 5′- ACG TTG CTA TCC AGG CTG TGC TAT-3′, and reverse 5′-TTA ATG TCA CGC ACG ATT TCC CGC-3′ were used with all samples. The primers were synthesized by BioAsia Co. (Shanghai, China). The cycling conditions were 15 s at 95 °C, 45 cycles of 5 s at 95 °C, 20s at 60 °C, 10s at 72 °C, and 15 s at 65 °C. Data were analyzed using the GeneAmp 5700 Sequence Detection System software (version 1.1; Applied Biosystems, Foster City, CA) and were converted into threshold cycle (Ct) values.
+ Open protocol
+ Expand
2

Sperm RNA Extraction and RT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each sperm pellet was homogenized in 500 μL of TRIzol reagent at room temperature for 30 minutes. Then 200 μL of chloroform was added and shaken for 15 seconds, following centrifugation at 12,000 × g for 15 minutes at 4 °C. The upper supernatant was collected and precipitated using 500 μL isopropanol. After centrifugation of 12,000 × g, pellet was washed by 70% ethyl alcohol and resolved in sterile diethypyrocarbonate (DEPC) water. Complementary DNAs (cDNAs) were synthesized according to the instructions provided using avian myeloblastosis virus reverse transcriptase (Promega, Madison, WI). Primers were designed using Primer Premier 7.0 software (PREMIER Biosoft International, Palo Alto, CA) and each primer was submitted into an National Center for Biotechnology Information (NCBI) BLAST search to ensure specificity for the target mRNA. Real-time RT-PCR was performed under conditions of 2 minutes at 95 °C, followed by 15 seconds at 95 °C and 50 seconds at 65 °C for 40 cycles. Data were analyzed using the GeneAmp5700 Sequence Detection System software (version 1.1; Applied Biosystems, Foster City, CA) and were converted into threshold cycle (CT) values. All samples were normalized according to b-actin content. The formula 2–△Ct was used to calculate the relative mRNA levels.[20 (link)]
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!