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Avalanche photodiode

Manufactured by PerkinElmer
Sourced in United States

An avalanche photodiode is a type of photodetector that operates by the avalanche effect. It is a semiconductor device that converts light into an electrical signal. Avalanche photodiodes are known for their high sensitivity and fast response time, making them useful in various applications that require the detection of low-light signals.

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9 protocols using avalanche photodiode

1

Fluorescence Correlation Spectroscopy of Sporulation

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FCS measurements were all performed at room temperature (22°C) using an Olympus FluoView 1000 confocal microscope. Sporulating cells from taken at every hour from liquid sporulation (1% potassium acetate; imaging medium) cultures and FCS was performed on microscope slides covered with 1% potassium acetate pad. Fluorescence fluctuations were detected by avalanche photodiodes (Perkin-Elmer) and autocorrelation curves were calculated by an ALV-5000E correlation card (ALV Laser) at three randomly selected points of each nuclei, with 10 × 8 s runs. For FCS data processing and autocorrelation curve fitting the QuickFit 3.0 software was used (Krieger and Langowski, 2015 ) applying a 3D normal diffusion model for two-component fitting: G(τ)= 1N[ρ1(1+ ττ1)1(1+ τγ2τ1)12+ρ2(1+ ττ2)1(1+ τγ2τ2)12] where τ is the lag time, τtr is the triplet correlation time, τ1 and τ2 are the diffusion times of the fast and slow species, ρ1 and ρ2 = 1 − ρ1 are the fractional amplitudes of the two components, N is the average number of molecules in the detection volume, and γ is the aspect ratio of the ellipsoidal detection volume. Autocorrelation curves distorted by aggregates floating through the focus were excluded from the analysis.
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2

Two-Photon Fluorescence Fluctuation Imaging

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Two-photon fluorescence fluctuation imaging was performed using an Avalanche Photo Diode-based detector (ISS, Champaign, IL, USA). Excitation from a femtosecond pulsed infrared laser (MaiTai, Newport/Spectra Physics, Mountain View, CA, USA) was focused through a 60×1.2NA water immersion objective (Nikon APO VC) onto coverslip N1 (VWR). Calibration of the volume of the two-photon point spread function (PSF) was carried out using 40 nM fluorescein solutions (Spectrum) and 780 and 930 nm excitation at a laser power 12 and 43 mW, respectively. An excitation wavelength of 930 nm was used for the measurement of the GFP. The average power exciting laser was 11 mW. The wavelength was selected to simultaneously optimize GFP emission and minimize cellular auto-fluorescence. The excitation power was chosen to maximize the signal, while avoiding saturation and photo-bleaching effects. Infrared light was filtered from detected light by using a 735 nm low-pass dichroic filter (Chroma Technology Corporation, Rockingham, VT, USA). Emitted light was filtered with a 530/43 nm emission filter and detected by avalanche photodiodes (Perkin Elmer).
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3

Dual-Color STED Microscopy Protocol

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Dual-color STED microscopy was carried out with a custom-built system (Lauterbach et al., 2013 (link)) using two excitation beams at 480 ± 10 nm and 532 ± 5 nm obtained by filtering a super-continuum laser beam, and one STED beam tuned at 647 nm, coupled with a helical phase mask (VPP-A1, RPC Photonics, New York) to produce a toroidal (donut-shaped) diffraction pattern centered on the excitation spot in the focal plane of a 100x/1.4NA objective lens (Olympus, Tokyo, Japan). Since the two excitation beams arise from a single monomode optical fiber, the two color-channels are co-aligned by design. Two-color STED imaging was achieved with two dyes, Atto565 and DY485XL, excited with the 532 nm and 480 nm excitation beams, respectively. Atto565 has excitation and emission peaks around 563 nm and 592 nm, respectively, whereas the long Stokes-shift dye DY485XL displays maximal excitation at about 485 nm, with an emission peak at around 560 nm. Fluorescence images were sequentially collected with an avalanche photodiode (Perkin Elmer) behind a 585/65 emission filter. A pixel size of 50 nm and a scanning dwell time of 100 µs were used for the acquisitions.
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4

Fluorescence Correlation Spectroscopy Analysis

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Fluorescence correlation spectroscopy (FCS) measurements were carried out with a homemade FCS setup43 (link) including an Olympus IMT-2 inverted microscope with a 40x, NA 1.2 water immersion objective (Carl Zeiss, Jena, Germany). A Nd:YAG solid state laser was used for excitation of SRB at 532 nm. The fluorescence that passed through an appropriate dichroic beam splitter and a long-pass filter was imaged onto a 50-μm core fiber coupled to an avalanche photodiode (PerkinElmer Optoelectronics, Fremont, CA). The signal from an output was correlated by a correlator card (Correlator.com, Bridgewater, NJ). The data acquisition time was 30 s. The experimental data were obtained under stirring conditions which increased the number of events by about three orders of magnitude thus substantially enhancing the resolution of the method. Peak intensities of fluorescence traces with the sampling time of 25 μs were analyzed using WinEDR Strathclyde Electrophysiology Software designed by J. Dempster (University of Strathclyde, UK). The software, originally designed for the single-channel analysis of electrophysiological data, enables one to count the number of peaks [n(F > F0)] of the FCS signal having amplitudes higher than the defined value F0. A program of our own design with a similar algorithm (coined Saligat; provided on request) was also used.
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5

Fluorescence Correlation Spectroscopy Protocol

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Eight-well chambered coverglasses (Nunc, Rochester, NY) were prepared by plasma cleaning followed by incubation over night with polylysine-conjugated polyethylene glycol (PEG-PLL), prepared using a modified Pierce PEGylation protocol (Pierce, Rockford, IL). PEG-PLL coated Chambers were rinsed with and stored in Milli-Q water until use. FCS measurements were done on a lab-built instrument based on an Olympus IX71 microscope with a continuous emission 488 nm DPSS 50 mW laser (Spectra-Physics, Santa Clara, CA). All measurements were done at 20 °C. The laser power entering the microscope was adjusted to 4.5 μW. Fluorescence emission collected through the objective was separated from the excitation signal through a Z488rdc long pass dichroic and an HQ600/200 m bandpass filter (Chroma, Bellows Falls, VT). Emission signal was focused through a 50 μm optical fiber. Signal was amplified by an avalanche photodiode (Perkin Elmer, Waltham, MA) coupled to the fiber. A digital autocorrelator (Flex03Q-12, correlator.com, Bridgewater, NJ) was used to collect 30 autocorrelation curves of 30 seconds for each measurement. Fitting was done using MATLAB (The MathWorks, Natick, MA).
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6

Optical Mapping of Cardiac Membrane Potentials

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PLFFM has been extensively described elsewhere19 ,20 (link). Briefly, the excitation light source was obtained from a green (532 nm) Yag laser. The light pulses were focused by an objective into a small (200 µm dia, 0.67 NA) multimode optical fiber. Emitted light was carried back through the same fiber, filtered and focused on an avalanche photodiode (Perkin Elmer, Waltham, MA). The recordings were obtained by gently placing one end of fiber on the tissue to immobilize the fiber optic relative to the heart surface. This procedure greatly attenuated motion artifacts.
Additionally, intracellular membrane potential was also recorded with sharp glass microelectrodes filled with 3 M KCl and connected to an electrometric amplifier (WPI, Sarasota, FL). Data acquisition was performed with a multifunction acquisition board (National Instruments, Austin, TX) controlled by a custom-designed, G-based software program (LabVIEW).
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7

Fluorescence Correlation Spectroscopy Setup

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The fluorescence correlation spectroscopy (FCS) measurements were carried out with a homemade FCS setup [29 (link),39 (link)] including an Olympus IMT-2 inverted microscope with a 40x, NA 1.2 water immersion objective (Carl Zeiss, Jena, Germany). A Nd:YAG solid state laser was used for excitation. The fluorescence that passed through an appropriate dichroic beam splitter and a long-pass filter was imaged onto a 50-μm core fiber coupled to an avalanche photodiode (PerkinElmer Optoelectronics, Fremont, CA). The signal from an output was correlated by a correlator card (Correlator.com, Bridgewater, NJ). The data acquisition time was 30 s. The experimental data were obtained under stirring conditions which increased the number of events by about three orders of magnitude, thus substantially enhancing the resolution of the method. The peak intensities of the fluorescence traces with a sampling time of 25 μs were analyzed using WinEDR Strathclyde Electrophysiology Software designed by J. Dempster (University of Strathclyde, UK). The software, originally designed for the single-channel analysis of electrophysiological data, enables one to count the number of peaks [n(F>F0)] of the FCS signal having amplitudes higher than the defined value F0. A program of our own design with a similar algorithm (coined Saligat; provided on request) was also used.
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8

Pulsed Local Field Fluorescence Microscopy for Ca2+ Transients

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Ca2+ transients were recorded with the pulsed local field fluorescence microscopy (PLFFM) (Mejía-Alvarez et al., 2003 (link); Aguilar-Sanchez et al., 2017 (link)). The PLFFM technique can assess physiological parameters by exciting exogenous probes present in the tissue and detecting the light emitted by these fluorescent indicators. The excitation (532 nm Yag laser) and emitted light propagate through a multimode optical fiber (200 μM diameter, 0.67 NA) placed on the surface of the intact heart. The emitted light then travels back through the multimode fiber, dichroic mirrors, and filters (610 nm) and is focused on an avalanche photodiode (Perkin Elmer, United States) with the aid of a microscope objective. The signal is digitized by an A/D converter (NI, United States) and acquired by a PC.
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9

Pulsed Local Field Fluorescence Microscopy for Ca2+ Transients

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Ca2+ transients were recorded (N = 8 hearts) using Pulsed Local Field Fluorescence Microscopy (PLFFM; Mejía-Alvarez et al., 2003 (link); Escobar et al., 2004 (link), 2006 (link); Valverde et al., 2006 (link), 2010 (link); Kornyeyev et al., 2010 (link); Mattiazzi et al., 2015 (link); Aguilar-Sanchez et al., 2017 (link)). The PLFFM technique assessed physiological parameters by exciting exogenous probes present in the tissue and detecting the light emitted by these fluorescent indicators. The excitation (532 nm Yag laser) and emitted light propagated through a multimode fiber optic (200 mm diameter, 0.67 NA) placed on the surface of the intact heart. The emitted light then traveled back through the multimode fiber, dichroic mirrors, and filters (610 nm) and was focused on an avalanche photodiode (Perkin Elmer, United States) with the aid of a microscope objective. The signal was digitized by an A/D converter (NI, United States) and acquired by a PC. The fluorescent indicator utilized to obtain Ca2+ transients in this study was Rhod-2 AM. Often referred to as a “Ca2+ indicator dye,” Rhod-2 AM (50 μg) was prepared with 20 μl of 20% pluronic in 1 ml fish ringer solution.
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