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Multidrop 384

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The Multidrop 384 is a liquid dispenser designed for high-throughput plate-based applications. It can precisely dispense volumes ranging from 0.5 to 50 microliters per well into 384-well microplates. The device features a multichannel dispensing mechanism and is capable of rapid, automated liquid dispensing to improve efficiency and productivity in laboratory workflows.

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11 protocols using multidrop 384

1

Automated Liquid Handling for Cell Transfection

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Several liquid handling and dispensing devices were used throughout this study. Transfection complexes and lentiviral supernatants were transferred using a 96 stainless steel head with disposable low-volume polypropylene tips on a PP-384-M Personal Pipettor (Apricot Designs, Monrovia, CA). The addition of cell suspensions and growth media was performed using the Multidrop 384 (Thermo Scientific, Waltham, MA).
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2

TIR-199 Kinase Specificity Profiling

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TIR-199 specificity profiling assays were carried out at The International Centre for Protein Kinase Profiling (http://www.kinase-screen.mrc.ac.uk/). TIR-199 kinase specificity was determined against a panel of 50 protein kinases as described previously [34 (link),35 (link)]. The assay mixes and 33P-γATP were added by Multidrop 384 (Thermo). Results are presented as a percentage of kinase activity in DMSO control reactions. Protein kinases were assayed in vitro with 1 μM final concentration of TIR-199 and the results are presented as an average of triplicate reactions ± SD or in the form of comparative histograms.
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3

Automated Evaluation of Cellular Toxicity

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Cellular toxicity was evaluated using an automated format of the CellTiter-Glo Luminescent Cell Viability Assay (Promega) at the High-Throughput Screening Laboratory (Life Sciences Institute, University of Michigan). Cells were seeded overnight on 384-well plates at 37°C. Cell suspension was dispensed using a Multidrop 384 (Thermo Scientific) system. Seeding densities for different cell types were as follows: TC-1: 1 x 104 cells/well; Jaws II: 1.5 x 104 cells/well; RawBlue: 2.0 x 104 cells/well in 40 μL of media/well. 3-fold serial dilutions of NE were prepared in the respective cell culture medium, spanning a 100,000-fold concentration range (1–0.000017% NE (w/v)). Media was removed from the plates, and 40 μL of the NE dilutions were added to each well. Each condition was run in duplicate. Cells were incubated for 24 h at 37°C. Supernatant was aspirated with an ELx405 microplate washer (Biotek), and cells were washed with PBS (3x). 10 μL of CellTiter-Glo reagent was added to each well and incubated at RT for 15 min. Luminescence was measured on a PHERAstar plate reader (BMG LabTech). The IC50 was defined as the NE concentration (% w/v) at which there is 50% cell viability after 24 h of treatment.
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4

Automated Liquid Handling for Cellular Assays

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Several liquid dispensing devices were used throughout this study. siRNA walk-through duplexes and shRNA lentiviral particles were transferred using a 384 stainless steel head with disposable low-volume polypropylene tips on a PP-384-M Personal Pipettor (Apricot Designs, Monrovia, CA). The addition of cell suspensions and growth media was performed using the Multidrop 384 (Thermo Fisher Scientific). Cell fixation and staining was performed using the ELx405 automated washer (BioTek, Winooski, VT).
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5

Flk1-EGFP Lentiviral Transduction of MC3T3 Cells

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MC3T3 cells were stably infected with Flk1 promoter–driven EGFP by using Flk1-EGFP lentivirus (GeneCopoeia). The plates were coated with laminin (20 μg/mL) and washed with PBS twice using an ELx405 plate washer (Bio-Tek Instruments). Cells in 25 μL medium per well were loaded by Multidrop 384 (Thermo Fisher Scientific), and the chemical compounds were pinned to the plates with media. GFP-positive cells (positive controls) and WT cells (negative controls) were also seeded. The plates were transferred to an STX220 CO2 plate incubator (LiCONiC Instruments) and incubated. The plates were transferred and delivered by a Thermo Fisher Scientific Spinnaker robot. EGFP expression was determined and imaged using a FlexStation II and Victor 3V (PerkinElmer) every day for 2 weeks.
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6

High-Throughput Screening of Kinase Inhibitors

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The high-throughput screening of 210,000 compounds was conducted in 384-well plates using Kinase-Glo ® (Promega Inc.). Seven hundred and forty-one plates were screened, 36 plates per day, in the UT Southwestern High-Throughput Screening Core (HTS). The substrate solution was comprised of 55.3 mM HEPES (pH 7.4), 55.3 mM MgCl2, 4.7 µM pWNK1, and 19.3 µM GST-OSR1. Fifteen microliters of it was added to each well by multiplexed dispensing (Multidrop384, Thermo Scientific). Then, 0.2 µL of pure DMSO (negative control, columns 2 and 23) or 0.5 mM compound (columns 3 to 22) or 0.4 mM control quinazoline inhibitor (Figure S1A) (column 24) were added using a Biomek Liquid handler. Next, 10 µL of 53 µM ATP stock solution was added to each well with a different multiplex dispenser (Biotech Inc.) to a final ATP concentration of 21 μM. The plates were centrifuged for 1 minute at 1000 rpm then incubated for 2 hours at room temperature with shaking. Then, 15 µL of Kinase-Glo (Promega Inc.) diluted 2:1 with solution of 55.33 mM HEPES, 55.33 mM MgCl2, pH 7.4 was added to each well using a Multidrop dispenser. Plates were centrifuged again for 1 minute at 1000 rpm and incubated for 10 minutes under agitation at room temperature. Luminescence was read on an EnVision Multilabel plate reader (PerkinElmer, Inc.).
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7

Systematic Antibiotic Combination Screening

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In total, we tested all two-, three-, four-, and five-drug combinations from a set of eight antibiotics (Table 1), meaning that 28, 56, 70, and 56 distinct drug combinations were tested at given concentrations, respectively. For each experiment, 25 µL of Luria Broth was added to each well of a 384-well plate (Greiner BioOne) using a Multidrop 384 (Thermo Scientific). An additional 25 µL of media was added to the media-only control. Using a Biomek FX (Beckman Coulter) with a 250 nL pin tool (V&P Scientific), we pinned 250 nL from every well of each of the three premade source plates (one plate with one antibiotic and DMSO and two plates with two antibiotics in combination) into the experimental plate. A 25 µL of a 10-4 dilution of the overday culture was then added to each well (except for the negative control). Plates were incubated at 37°C and read using an OD590 measurement every 4 h for 16 h. Each two-, three-, four- and five-drug experiment was tested at least three times (S1 Data).
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8

Kinase Inhibitor Specificity Profiling

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Kinase inhibitor specificity profiling assays were carried out at The International Centre for Protein Kinase Profiling (http://www.kinase-screen.mrc.ac.uk/). 4j biochemical kinase inhibitory property was determined against a panel of 139 protein kinases as described previously [42 (link),43 (link)]. The assay mixes and 33P-γ-ATP were added by Multidrop 384 (Thermo). Results are presented as a percentage of kinase activity in DMSO control reactions. Protein kinases were assayed in vitro with 5 μM final concentration of 4j, and the results are presented as an average of triplicate reactions in the form of comparative histograms using Adobe Illustrator.
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9

High-throughput Screening Protocol

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High-throughput screens, counter screens, orthogonal screens and hit validation experiments were performed using the HTS equipment: Echo555 Acoustic transfer system (Labcyte, Germany), MultiDrop 384 (Thermo Scientific), Washer Dispenser II (GNF, San Diego, CA, USA), EL406 Microplate Washer Dispenser (BioTek, Winooski, VT, USA), Bravo Automated Liquid Handling (Agilent, Santa Clara, CA, USA). Fluorescence/absorbance signals were measured by luminescence module of PheraStar FS plate reader (BMG Labtech, Ortenberg, Germany). 1536-well plates were from Nunc (#264711), and 384-well plates from Greiner (#781162).
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10

Cell Viability Monitoring Protocol

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HEK293, HB2, or CCD841 cells grew
in either RPMI or DMEM mediums supplemented with 10% FCS, 1% PS, and
1% l-glutamine (all from Biological Industries). Exclusion
of Mycoplasma contamination was monitored and conducted by test with
a Mycoalert kit (LONZA). Cells were trypsnized and counted, and 1000
cells/well were plated in 50 μL of growth medium into 384-well
white TC plates (Greiner) using a MultiDrop 384 (Thermo Scientific)
Washer Dispenser II. The number of viable cells was monitored using
a CellTiter-Glo Luminescent kit (Promega) in accordance with the manufacturer’s
protocol. Luminescence was measured using the luminescence module
of a PheraStar FS plate reader (BMG Labtech). Data analysis was performed
using GeneData 12 analytic software.
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