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11 protocols using pvdf membranes 0.45 μm

1

Western Blot Analysis of PDE4B and PDE4D

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Brain tissue was homogenized in RIPA buffer (Santa Cruz Biotechnology, Dallas, TX) containing 2 mM PMSF, 1 mM sodium orthovanadate, and protease inhibitor cocktail. The homogenate was then centrifuged at 25,000g for 5 min at 4 °C and the supernatant was used as whole lysates. Protein concentrations were determined by the Pierce BCA protein assay method. Equal amounts of protein (20 μg) were loaded onto 4–15% polyacrylamide BIS-Tris gels (Bio-Rad), separated by electrophoresis, and then transferred to PVDF membranes (0.45 μm) (Merck-Millipore, Darmstadt, Germany).
Antibodies were generated against PDE4B1 (N-15; 1:200 dilution; Santa Cruz Biotechnology, Dallas, TX), PDE4D (H-69; 1:200; Santa Cruz Biotechnology, Dallas, TX), and β-actin (AC-15; 1:10000; Sigma-Aldrich, St. Louis, MO). Membrane signals were detected using an LAS3000mini image analyzer (GE Healthcare, UK) and quantified using NIH ImageJ software. For each experiment, values obtained from PDEs were normalized by values from β-actin, respectively.
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2

Quantitative Western Blot Analysis of APP

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Cell lysates with 20 μL lithium dodecyl sulfate (LDS) sample loading buffer (Invitrogen) were loaded on 12% Bis-Tris Protein Gels (Invitrogen) and transferred to PVDF membranes (0.45 μm, Merck, Darmstadt, Germany). These membranes were pretreated with Blocking One (Nacalai Tesque) at room temperature and incubated with an anti-APP-C, anti-β-secretase (BACE1), anti-phosphorylated APP (Thr668), or anti-β-actin antibody. Following incubation with a goat anti-mouse or rabbit IgG -HRP antibody at room temperature, the membranes were treated with chemiluminescent reagents, and proteins were detected using ImageQuant LAS 4000 mini (GE Healthcare, Buckinghamshire, UK). The pixel density of each band was quantified by ImageJ software (NIH). As for the amount of total APP, the summed density of two bands between 110~160 kDa was calculated.
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3

Colon Protein Expression Analysis

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Mouse colon tissues were excised and their protein concentrations determined. Proteins were separated by SDS-polyacrylamide gel electrophoresis, and then transferred onto polyvinylidene fluoride (PVDF) membranes (0.45 μm; Millipore, USA). To these, specific antibodies (ZO-1 (Abcam, ab190085), Occludin (Abcam, ab216327), Claudin1 (Abcam, ab180158), JAK2 (Abcam, ab108596), pJAK2 (Abcam, ab32101), STAT3 (Abcam, ab68153), pSTAT3 (Abcam, ab267373) and β-Tubulin (Abcam, ab18207) were added for the immunoreaction, with the chemiluminescence reaction performed to observe the protein bands. β-tubulin was used as an internal control. Image J software was used to analyze the gray value of obtained protein bands.
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4

Quantifying Protein Expression in Cells

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Western blotting (WB) was performed to quantify the protein expression of hypoxia-inducible factor-2α (HIF-2α, Abcam, AB199) in bone marrow, and Caspase 3 (GeneTex, GTX110543) in blood. β-actin (ZS, TA-09) was performed as an internal reference protein. Briefly, blood cells and bone marrow cells were collected and lysed in radio immunoprecipitation assay (RIPA) buffer (Beyotime, China), and then Bicinchoninic Acid (BCA) protein assay (Thermo, USA) was used to determine protein concentration. 40 μg protein extracts were separated via polyacrylamide gel electrophoresis (PAGE) electrophoresis, and then transferred onto polyvinylidene fluoride (PVDF) membranes (0.45 μm, Millipore, USA). The membranes were blocked with 5% non-fat milk for 1 h under agitation, and then incubated with the primary antibody overnight. Subsequently, after washing 3 times with Tris Buffered Saline Tween (TBST), the membranes were incubated with the secondary antibody for 40 minutes at room temperature. Finally, enhanced chemiluminescence (ECL) detection reagents (Millipore, USA) were used to develop the protein, and Gel Image system ver.4.00 (Tanon, China) was carried out for quantifying the gray level, and β-actin bands were used for normalization.
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5

Caspase-3 Signaling Analysis of E5 Treatment

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After being treated with different concentrations of E5 (1–100 μM) for 24 h, cells were collected and subjected to caspase-3 signaling analysis. The western blot was performed as described previously.21 (link) Briefly, cells were lysed in RIPA lysis buffer with protease and phosphatase inhibitors at 4 °C for 30 min. The lysates were centrifuged for 15 min at 12 000 r.p.m. The proteins were loaded and resolved on 12% polyacrylamide gels (Applygen, Beijing, China) and electroblotted to PVDF membranes (0.45 μm, Millipore, Bedford, MA, USA). The blots were blocked with 5% non-fat milk in Tris-buffered saline containing 0.1% Tween-20 (TBST) for 2 h and probed with anti-cleaved caspase-3 antibody in 5% non-fat milk in TBST overnight at 4 °C. After being washed with TBST, the blots were incubated with the corresponding secondary antibodies. After a final wash, the antibody-antigen complexes on the blots were detected using Image Quant LAS 4000 (GE Healthcare Life Science, Pittsburgh, PA, USA).
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6

Western Blot Analysis of Protein Expression

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Cells and tumour tissues were lysed with RIPA buffer containing 1 mM phenylmethylsulfonyl fluoride (PMSF) and phosphatase inhibitor (Beyotime, Shanghai, China). Pierce™ BCA protein assay kit (Thermo Scientific, IL, USA) was applied to quantify the concentrations of proteins. The same number of proteins were solubilised in 2× sodium dodecyl sulphate (SDS) sample buffer and resolved on 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE). Afterwards, they were transferred to polyvinylidene fluoride (PVDF) membranes (0.45 μm, Millipore, Darmstadt, Germany). The membranes were blocked with 5% skim milk for 2 h and then incubated with primary antibodies at 4 °C overnight. The primary antibodies applied in this study were as follows: cleaved caspase-3, cleaved PARP, PI3K, p-PI3K, Akt, p-Akt, and β-actin (Cell Signalling Technology, MA, USA). Subsequently, the membranes were washed and incubated with appropriate horseradish peroxidase (HRP)-conjugated secondary antibodies at room temperature for 2 h. Signals were measured by an enhanced chemiluminescence (ECL) kit (Bio-Rad, CA, USA) and analysed by Image J software.
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7

TLR4 Signaling Pathway Protein Analysis

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The total protein was collected using trypsin with 0.25% ethylenediaminetetraacetic acid, PBS, and cell lysis buffer, and its quantity was measured by performing the bicinchoninic acid protein assay (40 (link)). The lysate (40 µg) was separated using SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes (0.45 μm, Millipore, USA) by using a Trans-Blot TurboTM (Bio-Rad, USA). The membranes were blocked with 5% (w/v) bovine serum albumin (BSA) dissolved in Tris-buffered saline Triton-X100 (TBST), and each was incubated with a different primary polyclonal antibody, i.e., against TLR4 (1:1000), MyD88 (1:1000), TRAF6 (1:1000), IRAK1 (1:1000), IRAK4 (1:1000), NF-κB p65 (1:1000), p-NF-κB p65 (1:1000), IκB-α (1:1000), p-IκB-α (1:1000), COX-2 (1:1000), iNOS (1:1000), or GAPDH (1:20000), overnight at 4°C, and all dilutions were in TBST blocked with 5% BSA. The membranes were analyzed using ECL reagents.
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8

Western Blot Protein Analysis

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Cell or tissue homogenates were subjected to protein isolation using RIPA lysis buffer, and then protein concentrations were estimated using bicinchoninic acid reagent (BCA-kit from Thermo Scientific, USA). An equal amount of (30 μg) protein from all samples were loaded into SDS-PAGE Bis-Tris 8–10% protein gel for electrophoresis and then transferred onto polyvinylidene difluoride (PVDF) membranes (0.45 μm, Millipore, Billerica, MA, USA). After protein transfer, PVDF membranes were blocked with 5% Bovine serum albumin (Sigma Aldrich, USA) for 1 h at room temperature and then blots were incubated with primary antibodies overnight at 4 °C. Primary antibodies (phospho-NFκB, total NFκB, phospho NFκB, p38, phospho p38, c-JUN) and loading control antibody GAPDH were purchased from Cell signalling technology, Massachusetts, USA. Secondary antibodies (Jackson Laboratory, USA) and an ECL kit (Advansta, Menlo park, CA, USA) were employed to generate chemiluminescent signals. ReBlot Plus Strong Antibody Stripping Solution (Millipore, USA) was used to re-probe the blots. All immunoblot quantifications were representing the triplicate repeats. Densitometry analysis was performed using ImageJ software.
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9

Western Blot Analysis of Protein Lysates

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Tissue samples were lysed in RIPA lysis buffer (#P0013B, Beyotime, Haimen, China) containing phenylmethane sulfonyl fluoride (PMSF) (#ST506, Beyotime, China). Subsequently, tissue samples were homogenized with a ball mill to obtain the total protein lysate. Protein concentrations of the tissue lysates were determined using a BCA protein assay kit (#P0010, Beyotime, China). Equal amounts of protein lysates were then separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (0.45 μm, Millipore, Darmstadt, Germany). PVDF membranes were blocked for 1 h at room temperature with Tris-buffered saline containing 0.05% Tween 20 and 5% powdered non-fat milk, and then incubated overnight with primary antibodies at 4 °C with shaking. Following three 5-min washes with Tris-buffered saline and 0.05% Tween 20, a secondary antibody was added and incubated for 1 h at room temperature. After washing (3 × 5 min), the membranes were visualized by chemiluminescence detection using Luminata Crescendo Western horseradish peroxidase (HRP) substrate (WBLUR0100, Millipore) according to the manufacturer’s instructions. Blots were imaged with the ChemiDoc XRS (Bio-Rad, Hercules, CA, USA) and analyzed using Image J software (http://imagej.nih.gov/ij/).
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10

Western Blot Analysis of Proteins

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Total protein from sow endometria and mouse uteri was extracted as described above. Equal amounts of protein were loaded and separated on SDS-PAGE gels and then transferred to PVDF membranes (0.45 μm, Millipore, MA, USA). After blocking with 5% skim milk or bovine serum albumin for 1 h at room temperature, membranes were incubated with corresponding primary antibodies (Supplemental Table 2) overnight at 4°C. After five washes with TBST, membranes were incubated with DyLight 800-labeled secondary antibodies (Cell Signaling Technology, MA, USA) for 2 h at room temperature. Membranes were washed and then visualized with the Odyssey CLx (LI-COR, NE). Band densities were quantified using the ImageJ software. β-Actin was used as the loading control.
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