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6 protocols using anti cytokeratin 5

1

Quantitative Analysis of Lung Metastases

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Mammary tumors and lungs were collected and processed as previously described [32] (link), [33] . Immunohistochemistry was performed as previously described [32] (link). The number of lung metastases was determined in two independent histological sections from each mouse and then averaged. Primary antibodies were used at a dilution of 1∶200 and were obtained from the following sources, anti-Ki67, anti-cytokeratin 5 and anti-cytokeratin 14 (Abcam, Cambridge, MA), anti-cytokeratin 18 (Research Diagnostics Inc, Flanders, NJ), and anti-cytokeratin 8 (Fitzgerald Industries International Inc, Concord, MA). Primary antibodies were detected using a 1∶200 dilution of the appropriate secondary antibody and Sigma Fast 3,3′-diaminobenzidine tablets (Sigma, St. Louis, MO). Ki67 immunohistochemistry was quantified using Positive Pixel Count software v9 (Aperio, Vista, CA) following slide scanning on a ScanScope CS slide scanner (Aperio, Vista, CA).
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2

Immunohistological Analysis of Thymic Microenvironment

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For analysis of thymic medulla and cortex by immunohistology, thymi from GCV treated TK and TK+ mice were fixed in 4% formalin and embedded in paraffin blocks. Sections (5 μm) were stained with hematoxylin and eosin (H&E) and examined by light microscopy. For immunofluorescence, serial sections (5 μm) from OCT-embedded frozen tissues or primary cultured cells were fixed in cold acetone or 4% polyoxymethylene and blocked in PBS/1% BSA, washed in PBS/0.05% Tween and incubated with optimal dilutions of fluorochrome-conjugated antibodies: Alexa Fluor® 488 anti-I-A/I-E, anti-CD31-PE (Biolegend), anti-CD11c-PE, anti-CD11b-FTIC (BD Pharmingen), and anti-F4/80-PE (eBioscience), or with first Abs: anti-cytokeratin 5, anti-FSP1, anti-ER-TR7 (Abcam), anti-cytokeratin 8 (Tromal-1; Developmental Studies Hybridoma Bank), Biotinylated UEA-1, anti-vimentin (BD Pharmingen), anti-α-SMA, anti-Pan-CK (Sigma, Cat no. C5992), anti-CD140a/PDGFRα (R&D Systems) and anti-MTS15 Ab for 2 h at room temperature before washing and incubating with secondary reagents: Alexa Fluor® 546 Goat anti-Rabbit/mouse IgG (H+L), Alexa Fluor® 488 Goat anti-Rat IgG (H+L) (Invitrogen), Dylight 488 Goat anti-Rabbit/mouse IgG (ZSGB-Bio) and streptavidin-PE (BD PharMingen). Control slides were incubated with isotype-matched Ig. Images were acquired with a two-photon microscopy (Carl Zeiss, Inc.).
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3

Immunofluorescence Staining Protocol

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Antigen retrieval was conducted by preheating in sodium citrate buffer (pH 6.0) for 30 minutes at 95°C in a pressure cooker. Tissue was blocked in 1% BSA solution for 2 hours or in M.O.M blocking solution (Vector Laboratories, MKB 2213) for 1 hour at room temperature, followed by blocking in 1% BSA solution for 2 hours. Primary antibodies were applied overnight at 4°C in a humidified chamber, and secondary antibodies (Alexa-Fluor 594 : Invitrogen, A11032; Alexa-Fluor 488 : Invitrogen, A11034; Alexa-Fluor 594 : Invitrogen, A11037; Alexa 647: Invitrogen, A-21244) were applied for 1 hour at room temperature. All IF slides were mounted using ProLong gold mounting media with DAPI (Fisher Scientific, P36935). IF slides were scanned using an Aperio Scanscope FL (Leica Biosystems). The following primary antibodies were used for IF study: anti-Cytokeratin 5 (Biolegend Inc, PRB-160P), anti-puromycin (EMD Millipore, MABE343), anti-p-eEF2K(S366) (Cell Signaling Technology, 3691), anti-ARID1A (Sigma, HPA005456), anti-Cytokeratin 5 (Abcam, ab52635). Image analysis was done using semiautomated image analysis software (HALO, Indica Labs).
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4

Immunohistochemical Analysis of Epidermal Markers

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All chemical reagents were obtained from Sigma-Aldrich. The antibodies were as follows: anti-loricrin (Abcam, ab24722), working dilution for immunohistochemistry (IHC) 1/1000; anti-involucrin (Santa Cruz, sc-15230), working dilution for IHC 1/1000; anti-cytokeratin 5 (Abcam, ab24647), working dilution for IHC 1/1000; antidesmoglein 1 (Santa Cruz, sc-20114), working dilution for IHC 1/300; anti-desmocollin 1 (Santa Cruz, sc18115), working dilution for IHC 1/250; anti-corneodesmosin (CusAb, CSBPA0051241A01HU), working dilution for IHC 1/500.
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5

Immunofluorescence Staining Protocol

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Antigen retrieval was conducted by preheating in sodium citrate buffer (pH 6.0) for 30 minutes at 95°C in a pressure cooker. Tissue was blocked in 1% BSA solution for 2 hours or in M.O.M blocking solution (Vector Laboratories, MKB 2213) for 1 hour at room temperature, followed by blocking in 1% BSA solution for 2 hours. Primary antibodies were applied overnight at 4°C in a humidified chamber, and secondary antibodies (Alexa-Fluor 594 : Invitrogen, A11032; Alexa-Fluor 488 : Invitrogen, A11034; Alexa-Fluor 594 : Invitrogen, A11037; Alexa 647: Invitrogen, A-21244) were applied for 1 hour at room temperature. All IF slides were mounted using ProLong gold mounting media with DAPI (Fisher Scientific, P36935). IF slides were scanned using an Aperio Scanscope FL (Leica Biosystems). The following primary antibodies were used for IF study: anti-Cytokeratin 5 (Biolegend Inc, PRB-160P), anti-puromycin (EMD Millipore, MABE343), anti-p-eEF2K(S366) (Cell Signaling Technology, 3691), anti-ARID1A (Sigma, HPA005456), anti-Cytokeratin 5 (Abcam, ab52635). Image analysis was done using semiautomated image analysis software (HALO, Indica Labs).
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6

Multicolor Immunofluorescent Staining

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Primary antibodies used were:
anti-β-glactosidase (Abcam ab9361) 1:500,
anti-E-cadherin (BD Biosciences #610182) 1:50,
anti-Neuronal Class III β-Tubulin (Covance, PRB0435-P) 1:1000,
anti-Cytokeratin 5, (Abcam ab24647)1:1000.
anti-Cytokeratin-8 (DSHB TROMA-I)1:50.
Fluorescently conjugated secondary antibodies, each used at 1:300 were: Alexafluor 488, AlexaFluor 546, AlexaFluor 660 (Invitrogen), or Dynalight 488 (Abcam).
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