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29 protocols using rf 20axs

1

Amino Acid Composition Analysis by HPLC

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The amino acid composition was estimated according to the method described by Hadidi et al. (2021) [20 (link)] by high performance liquid chromatography (HPLC) system (Shimadzu, Tokyo, Japan) with a fluorescence detector (RF-20AXS, Shimadzu, Tokyo, Japan). First, 50 mg of samples were hydrolyzed by 2 mL of 6 N HCl at 110 °C for 24 h. Next, 10 μL of samples was added to 20 μL reagent (AccQ-fluor derivatization) and mixed at 55 °C for 10 min. A mixture of acetonitrile (60% v/v) and sodium acetate buffer (pH 4.9) was used as an eluent.
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2

Quantification of SN-38 in Cells

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SN-38 was quantified by using HPLC with a fluorescence detector (RF-20Axs; Shimadzu Corporation, Kyoto, Japan; excitation, 370 nm; emission, 530 nm). The frozen cells were dissolved in 0.4 M NaOH and neutralized with 0.4 M HCl. Acetonitrile (400 or 1200 μL), 5 ng/mL camptothecin as an internal standard in methanol (60 µL), and 0.02 M HCl (30 µL or 120 µL) to convert SN-38 to lactone26 (link) were added to the samples (100 or 300 µL). The mixture was centrifuged at 10,000 g for 3 min and evaporated to dryness under a stream of N2 at 40 °C. The residue was dissolved in 200 µL of the mobile phase (a 75:25 (v/v) ratio of 20 mM citrate buffer, pH 3.0: acetonitrile) and analyzed by using HPLC (LC-20AT; Shimadzu Corporation, Kyoto, Japan) on an Inertsil ODS III column (4.0 mm I.D. × 250 mm × 4 mm, 5 μm; column temperature, 40 °C; GL Sciences Inc., Tokyo, Japan) at a flow rate of 1.0 mL/min. Each result was standardized to the protein content in each sample. Protein content was determined by using Lowry’s method27 (link) with bovine serum albumin as the standard.
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3

PAHs Extraction and Quantification

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Forty percent of each sample filter was cut into small pieces and extracted with methanol by ultra-sonication [8 (link)]. After filtration, the extract was evaporated to dryness. Ten PAHs, namely, FR, PY, BaA, CHR, BbF, BkF, BaP, DahA, BghiP, and IcdP, were analyzed by high-performance liquid chromatography using a fluorescence detector (RF-20AXs, Shimadzu Co., Kyoto, Japan). PAHs were separated with a Wakosil-PAHs column (4.6 mm × 250 mm, Wako Pure Chemical Industries, Ltd., Osaka, Japan) and measured with the following excitation (Ex)/emission (Em) wavelengths: FR and PY, 250 nm/420 nm; BaA, CHR, BbF, and BkF, 270 nm/400 nm; BaP, DahA, and BghiP, 296 nm/410 nm; and IcdP, 300 nm/500 nm [8 (link)]. The LOQ of PAHs were as follows: FR, 101 fg/m3; PY, 165 fg/m3; BaA, 14 fg/m3; CHR, 98 fg/m3; BbF, 127 fg/m3; BkF, 63 fg/mm3; BaP, 14 fg/m3; DahA, 39 fg/m3; BghiP, 50 fg/m3; and IcdP 112 fg/m3.
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4

HPLC Analysis of Ochratoxin A

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HPLC analyses were performed with a Shimadzu HPLC (Shimadzu, Kyoto, Japan) consisting of a binary pump capable of producing a flow rate at 1 mL/min, a syringe loading injection valve with a 100 µL loop. Chromatographic separation was performed by a reverse-phase column (Zorbax C18, 150 mm × 4.6 mm, 5 µm particles, Phenomenex, Torrance, CA, USA) preceded by a 0.5 µm filter and thermostated at 30 °C. The mobile phase was ACN: H2O: Acetic acid (99:99:2, v/v/v) eluted at rate of 1 mL/min. A fluorescence detector (Shimadzu RF-20A xs) was used and set at 333 nm and 460 nm for excitation and emission wavelengths, respectively. The injection volume was 30 µL for both purified urine extracts and purified food extracts. The run time was 10 min. The analytical method used in this study is the European Standard Method EN 14132:2003 also adopted by AOAC as Official Method 2000.03. This method was successfully validated with an interlaboratory study conducted on barley but resulted equally efficient for other cereals and foods by several laboratories worldwide and recommended by companies producing immunoaffinity columns specific for OTA. Successively the European Committee for Standardization (CEN) decided to update this method by editing EN 14132:2009 who incorporated a similar method specific for roasted coffee.
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5

Amino Acid Composition Analysis of Silk Fibroin

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After 0.01 g of dried fractionated SFs in 6 M HClaq were treated for 18 h at 105 °C, the hydrolyzed solution was neutralized by 0.2 M sodium citric acid and filtered through a 0.45 µm filter (Hawach Scientific Co. Ltd., Shaanxi, China). The amino acid compositions were ascertained using a prominence amino acid analysis system (RF20AXS; Shimadzu Corp., Kyoto, Japan) and a Na-type amino acids mobile-phase kit (Shimadzu Corp., Kyoto, Japan). The amino acid compositions were glycine, alanine, serine, and tyrosine, which are the major amino acids in the SF molecule. They were calculated with normalization against the total concentrations of serine and tyrosine.
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6

HPLC Analysis of Aflatoxin M1

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The dried extract was resuspended in 1 mL of mixture of ultra-pure H2O: CH3OH: CH3CN (60:30:10, v/v/v). An aliquot of 10 µL was injected into HPLC equipped with an oven (CTO-10A), pump (LC20AD), degasser (DGU-20A3), auto sampler (SIL-20AHT), fluorescence detector (RF-20AXS), and reversed-phase column (XR-ODS/C8/Phenyl, 3 mm × 100 mm, 2.2 µm, Shimadzu, Kyoto, Japan). The excitation and emission wavelengths were 365 nm and 435 nm, respectively. The mobile phase was H2O: CH3OH: CH3CN (60:30:10, v/v/v) at a flow rate of 0.5 mL/min at 50 °C, with a total run time of 10 min [54 ]. The AFM1 concentration was expressed in ng of AFM1/g.
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7

Quantifying Tocopherols in Canola Oil

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Tocopherols were determined by normal phase HPLC under isocratic condition using a Phenomenex Luna silica column (150 mm × 4.6 mm, 3 µm, 100 A) fitted with a silica 4 × 3.0 mm Security Guard cartridge (Phenomenex Australia Pty, Sydney, Australia) on an HPLC system. Canola oil (260–750 mg, depending on the oil sample, weights of aged oil were increased to improve quantification) was dissolved in 10 mL hexane and filtered through 0.45 µm syringe filters into amber HPLC vials, with 10 µL being injected onto the column. The mobile phase was hexane: isopropanol (99.5:0.5 v/v) and the flow rate was 1.0 mL/min (total run time was 20 min). A Varian Star INERT 9012 binary pump was used with a Varian ProStar Model 410 autosampler. Tocopherols were determined using a Prominence Fluorescence detector (RF—20A XS, Shimadzu, Melbourne, Australia) with excitation wavelength, 290 nm and emission wavelength, 330 nm. Five-point calibration curves were constructed in the ranges of 0.50–6.00 mg/L and 1.00–15.00 mg/L for α- and γ-tocopherols, respectively, and used to quantify tocopherols.
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8

Plasma Amino Acid Analysis by HPLC

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Plasma was derivatized60 (link) with AccQ-Fluor Reagent Kit (Waters, Milford, MA, USA) according to the manufacturer’s instructions. HPLC was performed on Nexera sytem equipped with degasser DGU-20/A5, auto-sampler SIL-30AC, column oven CTO-20AC and fluorescence detector RF-20AXS (all obtained from Shimadzu, Kyoto, Japan). Chromatographic separation was performed on Reprospher 100 C18-DE 1.8 μm, 50 × 2 mm (Dr Maisch GmbH, Ammerbuch-Entringen, Germany) at 45 °C. Elution was performed using acetonitrile and sodium acetate buffer, pH 5.25, at flow rate of 0.8 ml min−1 using a gradient. Detection was carried out using excitation wavelength of 250 nm and emission wavelength of 395 nm.
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9

UHPLC Analysis of Tocopherols in Oils

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UHPLC analysis was realized using a Shimadzu Nexera (Shimadzu, Kyoto, Japan) coupled with the same components used for polyphenols analysis and a fluorescence detector RF-20Axs with double acquisition channels and a 12 µL cell. The detector was set at 296 nm and 325 nm for exciting and emission wavelengths, respectively. Oil samples were diluted in 2-propanol for reaching a 100 mg/mL concentration and 1μL injected on the column as a compromise between sensibility and column capacity.
The chromatographic separation was performed using an Agilent Eclipse PAH column (1.8 µm particle size, 4.6 × 50 mm) under isocratic conditions with solvent A (methanol) and B (acetonitrile) in the ratio 60/40 (v/v) and a total flow of 600 μL min−1. The oven temperature was set to 30 °C. The injected volume for each sample was 1 μL.
Tocopherols were quantified using a calibration curve for α, β+γ and δ respectively in the range 0.05–100 ng on the column with R2 values higher than 0.999.
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10

GFP-tagged YidC Protein Purification

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FSEC was performed as described previously with modifications (Kawate & Gouaux, 2006 ▶ ). The C-terminally GFP-His8-tagged YidC proteins were overproduced in Escherichia coli C41(DE3) or BL21(DE3) cells harbouring pRARE (Novagen) and the pCGFP-BC-based plasmid under a variety of growth conditions by changing key parameters such as culture temperature, duration and induction timing. The cells were grown in 5 ml LB medium supplemented with appropriate antibiotics. The cells were harvested, resuspended in buffer A (20 mM Tris–HCl pH 8.0, 300 mM NaCl, 0.1 mM phenylmethylsulfonyl fluoride) and disrupted by sonication with a Bioruptor (Cosmo Bio, UCW-310). After centrifugation at 13 000g for 30 min, the supernatant was solubilized with 2% n-dodecyl-β-d-maltoside (DDM) in buffer A. The insoluble material was removed by ultracentrifugation (Beckman Coulter, TLA55 rotor, 71 680g, 30 min) and the supernatant was loaded onto a Superdex 200 10/300 column (GE Healthcare) equilibrated in buffer B (20 mM Tris–HCl pH 8.0, 300 mM NaCl, 0.1% DDM). The fluorescence in the eluate was detected by a fluorometer (Shimadzu, RF-20Axs) with excitation at 480 nm and emission detection at 512 nm.
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