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SDS-PAGE is a laboratory technique used for the separation and analysis of proteins based on their molecular weight. It utilizes the anionic detergent sodium dodecyl sulfate (SDS) to denature proteins and apply a uniform negative charge, allowing the proteins to be separated solely by their molecular weight as they migrate through a polyacrylamide gel during electrophoresis.

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321 protocols using sds page

1

Western Blot Analysis of TOP2A and GAPDH

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Total protein was isolated using RIPA lysis buffer (Beijing Dingguo Changsheng Biotechnology Co., Ltd.) containing protease inhibitors (Beyotime Institute of Biotechnology). The protein concentration was determined using a BCA protein assay kit (Shanghai Zeye Biotechnology Co., Ltd.); then, 30 µg protein was separated via 10% SDS-PAGE (Beyotime Institute of Biotechnology) and transferred onto PVDF membranes (Pall Life Sciences). The membranes were blocked with 5% skimmed milk at room temperature for 1 h, then incubated with the following primary antibodies at 4°C overnight: Anti-TOP2A (1:5,000; cat. no. ZY-6562-21R) and anti-GAPDH (1:2,000; cat. no. ZY-6909-37R; both Shanghai Zeye Biotechnology Co., Ltd.). The membranes were incubated with horseradish peroxidase-conjugated secondary antibody (1:4,000; cat. no. 98164; Cell Signaling Technology, Inc.) for 1 h at room temperature, then the hybridization signals were detected by Immobilon Western chemiluminescence (EMD Millipore) and captured using Amersham ImageQuant 600 imaging system (cat. no. 29083461; GE Healthcare). The semi-quantification of the western blots was conducted using ImageJ version 1.52 (National Institutes of Health).
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2

Western Blot Protein Analysis Protocol

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Cells were washed with pre-chilled PBS and lysed in radioimmunoprecipitation assay (RIPA) buffer. Then, protein samples were separated by 10% SDS-PAGE (Beyotime Biotechnology, China), and the separated proteins were transferred to PVDF membranes (Millipore, Germany) at 110 mV. PVDF membranes were blocked in 5% nonfat milk for 1 hr at room temperature, rinsed with PBS, and incubated with target antibody and GAPDH antibody (1:5,000; Abcam, UK) overnight at 4°C. Afterwards, they were incubated with secondary antibodies (Proteintech, USA) for 2 h. After rinsing the secondary antibody, the PVDF membrane was detected by chemiluminescence and quantified using ImageJ.
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3

Hippocampal Protein Expression Analysis

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The hippocampus was separated 24 hours after model establishment, and cytosolic/mitochondrial proteins were extracted (KeyGEN BioTECH, China) and quantified using the BCA assay (Beyotime Biotechnology, China). Proteins were separated by 10% SDS-PAGE (Beyotime Biotechnology, China) and transferred to PVDF membranes (Bio-Rad, USA), which were then blocked with 5% non-fat milk at room temperature for 1 hour and incubated with rabbit-anti-Bcl-2, rabbit-anti-cleaved caspase-3 (both Cell Signaling, USA), rabbit-anti-Bax, rabbit-anti-Bcl-xL, rabbit-anti-cytochrome-c, rabbit-anti-COX-4 (all Epitomics, USA), and β-actin (4A Biotech, China) antibodies overnight at 4°C, followed by an HRP-conjugated secondary antibody for 1 hour; the membranes were developed using a super ECL assay kit (KeyGEN BioTECH, China) and a G-BOX imaging system (Syngene, UK).
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4

Western Blot Analysis of Protein Expression

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The RIPA kit (Beyotime, Shanghai, China) supplemented with phenylmethanesulfonyl fluoride was used to extract protein lysate from CRC tissues and cells according to the protocols. The BCA Protein Assay Kit (Beyotime, Shanghai, China) was used to quantify the protein concentration. The protein lysate was separated via 10% SDS-PAGE (Beyotime, Shanghai, China), next, it was transferred onto a polyvinylidene fluoride membrane (Millipore, USA). The membranes were blocked with 5% skim milk powder for 2 h and then incubated with the specific primary antibody overnight at 4°C, followed by a wash in TBST. Then, the membrane was incubated with the corresponding secondary antibody for 2 h at room temperature and then rinsed in TBST for three times (10 min each time). The level of protein expression was detected by ECL Plus (Millipore, USA) using a Bio-Imaging System (Bio-Rad, USA). The antibodies against SP1, IκBα, p- IκBα, p65, p-p65, E-cadherin, ZO-1, N-cadherin, Vimentin, HIF-1α, Histone H3, and β-actin were purchased from Abcam (Cambridge, MA, USA).
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5

Cardiac Protein Expression Analysis

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Whole protein was extracted from cardiac tissue (KeyGen Biotech, China) and quantified using a BCA assay (BioTeke Biotechnology, China). Total protein (30 μg per lane) from the homogenate of isolated ventricular myocytes was separated by 10% SDS-PAGE (Beyotime Biotechnology, China) and transferred to a PDVF membrane. The PVDF membrane was blocked with T-TBS containing 5% BSA (Sigma, USA) at room temperature for 1 hour and then incubated with rabbit anti-phospho-CaMKII (1 : 1000 dilution, Cat.ab182647, Abcam, USA), rabbit anti-oxidized-CaMKII (1 : 1000 dilution, Cat. # 07-1387, Millipore, USA), rabbit anti-CaMKII (1 : 1000 dilution, Cat.ab181052, Abcam, USA), mouse anti-PLN (1 : 1000 dilution, Cat.ab2865, Abcam, USA), rabbit anti-phospho-PLN (1 : 1000 dilution, Cat.ab15000, Abcam, USA), rabbit anti-phospho-RyR2 (1 : 1000 dilution, Cat.LS-C358303, LSBio, USA), mouse anti-RyR2 (1 : 1000 dilution, Cat.ab2827, Abcam, USA), and mouse anti-GAPDH (1 : 5000 dilution, Cat.ARG10112, Arigo, Taiwan) antibodies overnight at 4°C. The membranes were then washed with Tris-buffered saline-Tween (0.05%) solution and incubated with HRP-conjugated secondary antibody (1 : 5000 dilution, Lianke, China) for 1 hour. The membranes were developed using a super ECL assay kit (KeyGen Biotech, China) and a G-BOX imaging system (Syngene, UK).
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6

Whole Cell Protein Extraction and Western Blot Analysis

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The whole cell protein was extracted using RIPA buffer combined with protease inhibitor (Merck Millipore). The protein concentration was determined by the Bradford method (Beyotime, Shanghai, China). Protein was separated by 10% SDS/PAGE (Beyotime) and transferred to polyvinylidene fluoride membrane (Merck Millipore). The members were blocked in 5% skim milk with TBST for 1 h at room temperature. Then, the primary antibodies were incubated at 4 °C overnight and secondary antibodies for 1 h at room temperature. The primary antibodies used were mouse anti-GAPDH (Sigma, USA), rabbit anti-CXCR4 and rabbit anti-CXCR12 (Proteintech, Rosemont, IL, USA).
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7

Western Blot Analysis of Cell Cycle Regulators

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Total proteins of tissues and cultured cells were extracted by using RIPA buffer containing of 1% protease inhibitors (Sigma-Aldrich). The concentrations of soluble protein were measured by bicinchoninic acid (BCA) method (Beyotime, Nantong, China). Equal quality of total proteins of every group were separated with 10% SDS-PAGE (Beyotime, Nantong, China), transferred to PVDF, and blocked in 5% milk for 1 hr at RT. Membranes were incubated overnight at 4°C with the primary antibody against p16 (Abcam, ab51243), p21 (Abcam, ab109199), Cyclin E1 (Abcam, ab71535), Cyclin D1 (Abcam, ab16663), CDK4 (Abcam, ab137675), and GAPDH (Beyotime, Nantong, China). The secondary antibody against rabbit (Beyotime, Nantong, China) and mouse (Beyotime, Nantong, China) was incubated at RT for 1 hr. At last, ECL detection kit (Millipore, USA) was used to detect the protein bands.
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8

Western Blot Protein Analysis

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After cells were lysed by RIPA buffer (Beyotime) added with PMSF (Beyotime), protein concentration was identified by the BCA method kit (Solarbio). Protein samples were collected using 10% SDS-PAGE (Beyotime) and transferred to the polyvinylidene fluoride membranes (PVDF, Millipore). After blocked with 5% skim milk for 1 h, the membrane was incubated with primary antibodies overnight at 4°C and then with the corresponding horse radish peroxidase (HRP)-conjugated secondary antibody (1:2000 dilution) for 1 h at RT. Finally, enhanced chemiluminescence substrate (ECL kit, Millipore) were used for visualization.
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9

Protein Expression Analysis in PCa Cells

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Denatured proteins from PCa cells were resolved by 10% SDS-PAGE (Beyotime). The separated bands were subsequently transferred to PVDF membranes and incubated (12 h; 4°C) with PI3K (1 : 1200, ab191606), AKT (1 : 500, ab8805), p-PI3K (1 : 500, ab182651), p-AKT (1 : 500, ab38449), CDC6 (1 : 1,000, ab109315), and GAPDH (1 : 3000, ab8245) primary antibodies. They were then incubated (2 h, 25°C) with goat anti-rabbit antibody (1 : 12,000, ab205718). Antibodies were obtained from Abcam (Cambridge, UK).
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10

Whole Cell Protein Extraction and Western Blot Analysis

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The whole cell protein was extracted using RIPA buffer combined with protease inhibitor (Merck Millipore). The protein concentration was determined by the Bradford method (Beyotime, Shanghai, China), and 20 μg of protein was separated by 10% SDS/PAGE (Beyotime) and transferred to polyvinylidene fluoride membrane (Merck Millipore). Then, the primary antibodies were incubated at 4 °C overnight and secondary antibodies for 1 h at room temperature. The primary antibodies used were mouse anti‐β‐actin (Sigma, USA), rabbit anti‐SIX1 (Proteintech, Rosemont, IL, USA), PCNA, c‐myc, cyclin‐D1 and cyclin‐A1 (Cell Signaling Technology, USA).
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