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13 protocols using rhod2 am

1

Intracellular and Mitochondrial Calcium Visualization

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The detection of calcium distribution was visualized by staining with Fluo4-AM (37 °C for 30 min; Dojindo, Japan) and Rhod2-AM (4 °C for 30 min; Dojindo, Japan) for the intracellular and intramitochondrial calcium, respectively. The nuclei were visualized by staining with Hoechst 33342 (Dojindo, Japan).
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2

Calcium Imaging in Brain Slices

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Brain tissues were immersed in ice-cold ACSF solution, consisting of 124 mM NaCl, 1.5 mM KCl, 2.5 mM CaCl2, 1 mM MgCl2, 1.25 mM NaH2PO4, 22 mM NaHCO3, and 10 mM glucose. Brain slices (350 μm) were incubated in the ACSF (pH 7.3) equilibrated with 95% O2 to 5% CO2 for 30 min at room temperature and loaded with a fluorescent Ca2+ indicator, 10 mM rhod2-AM (Dojindo, Kumamoto, Japan), for 90 min. rhod2-AM-loaded slices were placed in a small flow-through chamber on a microscope stage and continuously perfused (2 mL/min) with the equilibrated ACSF solution at 32°C . Fluorescence images of rhod-2-loaded slices (>580 nm), at the excitation wavelength of 520–550 nm were obtained through a low-magnification objective lens (UM Plan Fl 10×, Olympus, Tokyo, Japan). Data were recorded using the imaging system as described previously with modifications.33 (link) Images were sequentially captured every 20 s. For quantitative analysis, the fluorescence intensity at each time point was divided by that of the initial image stored as a reference.
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3

Measuring Calcium Dynamics in Cells

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Changes in the cytosolic Ca2+ ([Ca2+]cyt) and [Ca2+]mit levels were measured using Fluo 4-AM and rhod 2-AM (Dojindo Laboratories), respectively as previously described (46 (link),47 (link)). For the improvement of mitochondrial localization of rhod 2-AM, it was reduced to the colorless, non-fluorescent dihydrorhod 2-AM by sodium borohydride, according to the manufacturer’s instructions. The cells were loaded with 4 µM each of Fluo 4-AM or dihydrorhod 2-AM for 40 min at 37°C, washed with HBSS. Subsequently, the cells (1×106/ml) were resuspended in HBSS in 96-well plates. The cells were then manually supplemented with the agents to be tested PSM (12.5–50%), 100 ng/ml TRAIL, 5 mM KCl, 100 µM glibenclamide, 100 µM U37883A alone or in combination for 1, 3, 5 and 10 min. The cells were then measured for fluorescence using a microplate reader (Fluoroskan Ascent) with excitation and emission at 485 and 538 nm (for Fluo 4-AM) and 542 and 592 nm (for rhod 2-AM), respectively. For the analyses of Ca2+ release and store-operated Ca2+ entry (SOCE), Fluo4-AM-loaded cells were suspended in a Ca2+-free medium (HBSS supplemented with 1 mM CaCl2) and treated with 1 µM thapsigargin (Tg) for 10 min and then added with 2 mM CaCl2. The fluorescence was measured as described above with excitation and emission at 485 and 538 nm.
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Calcium Imaging of RAW264.7 Cells

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RAW264.7 cells cultured on scaffolds for 3 days were stained with Fluo‐4 AM (37 °C for 30 min; Dojindo, Japan) and Rhod‐2 AM (4 °C for 30 min; Dojindo, Japan) to label Ca2+ in the cytoplasm and mitochondria, respectively.[56]
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5

Intracellular and Mitochondrial Calcium Imaging

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Intracellular and mitochondrial Ca2+ levels were measured as described previously [24 (link)]. Briefly, cells were stained with Fluo-4 AM (to detect intracellular Ca2+; Thermo Fisher Scientific) and Rhod-2 AM (to detect mitochondrial Ca2+; Dojindo). Fluorescent signals were measured using an Infinite 200 PRO plate reader (Tecan, Männedorf, Switzerland). Fluorescent images were acquired using a Nikon C2 confocal microscope.
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6

Fluorescent Dye Loading Protocol

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Fluorescent loading solutions were prepared based on our previously published methods43 (link). The concentration of the loading solution for preparing different kinds of fluorescent indicators was 0.5 mmol/L; a volume of 99 μL of sliced flesh tissue, single cell or protoplast suspension was placed into 0.5 ml centrifuge tubes, and 1 μL of a loading solution of fluo-4/AM, fluo-8/AM or rhod-2/AM (Dojindo Laboratories, Kumamoto, Japan) was added to make the final concentration of the fluorescent dye 5 µmol/L. We loaded the fluorescent dye into the cells for 30 min at 37 °C in the dark. After loading, the dye was washed three times with a basic solution to remove excess fluorescent dye and observed with a fluorescence microscope. Since the excitation wavelength of fluo-4/AM and fluo-8/AM is 490 nm, we selected GFP as the light cube. In turn, RFP was used as the light cube when loading rhod-2/AM because the excitation wavelength of rhod-2/AM is 551 nm.
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7

Molecular Mechanisms of Neuronal Differentiation

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Retinoic acid (RA), dimethylsulfoxide (DMSO), FM 1-43FX, MTT, β-mercaptoethanol (β-ME), 4,6-Diamidino-2-phenylindole (DAPI), inositol 1,4,5-triphosphate (IP3), L165041 and GSK0660 were purchased from Sigma-Aldrich (St. Louis, MO, USA). DMEM medium, fetal bovine serum (FBS), B27 supplement, neuralbasal medium was obtained from Gibco BRL (Burlington, Ontario, Canada). Non-essential amino acids (NEAA) stock solution was purchased from Hyclon (Logan, USA). Recombinant mouse leukemia inhibitory factor (LIF) was obtained from Millipore (CA, USA). Antibodies were used as follows: β-tubulin III, neuronal nuclei (NeuN), and neurofilament 160 (NEFM) were purchased from Sigma-Aldrich (St. Louis, MO, USA); synaptophysin and GAPDH were products of Cell Signaling; Nestin was from Millipore (CA, USA); PPAR-α, -β, -γ, Mfn1 and Mfn2 were ordered from Abcam; PGC-1α, Fis1, Drp1 and OPA1 were purchased from Santa Cruz Biotechnology. Secondary antibodies were purchased from Multisciences. Rhod-2AM was purchased from Dojindo Molecular Technologies. MitoTracker Green was a product of Life technologies.
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8

Visualizing Intracellular Calcium Levels

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Rhod 2-AM (Dojindo, Mashiki, Japan), a Ca2+ indicator, was used to visualize intracellular Ca2+ levels. Cells were incubated with 5 μM Rhod 2-AM in a loading medium (20 mM HEPES (pH 7.4), 115 mM NaCl, 5.4 mM KCl, 0.8 mM MgCl2, 1.8 mM CaCl2 and 13.8 mM glucose) at 37 °C for 30 min. After washing with PBS, the Rhod 2 signal was observed using the fluorescent microscope.
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9

Imaging ER and Mitochondrial Calcium Dynamics

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ER Ca2+ and mitochondrial Ca2+ (mito Ca2+) fluxes were monitored with confocal microscope using Fluo 4-AM and Rhod 2-AM respectively43 (link). Jurkat cells were seeded into glass-bottom culture dishes at a density of 2 × 106cells per dish. After routine drug treatment, cells were loaded with cell-permeant calcium indicators, 2 μM of Fluo 4-AM (DOJINDO Laboratories) and 2 μM of Rhod 2-AM (DOJINDO Laboratories), in HBSS for 30 min at 37 °C. The calcium distribution imaging was measured by confocal microscopy.
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10

Calcium Imaging of Macrophages

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For cytosolic or mitochondrial calcium measurements, macrophages were treated with AHs for 6 hours, and then cells were loaded with 8 μmol/L Fluo-4-AM (F312; Dojindo Laboratories, Kumamoto, Japan) or Rhod-2-AM (R001; Dojindo Laboratories) for 30 minutes in the dark as the manufacturer instructed, respectively.54 (link) After being washed for 3 times and incubated with Hank's balanced salt solution or HEPES buffer saline for 30 minutes, cells were analyzed on an Olympus confocal microscope. The relative cytosolic and mitochondrial levels were calculated by the fluorescence intensity per cell.
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