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Fluoromax 3 fluorimeter

Manufactured by Horiba
Sourced in Germany

The Fluoromax-3 is a fluorimeter manufactured by Horiba. It is a device used for the measurement and analysis of fluorescence spectra. The Fluoromax-3 is capable of recording emission and excitation spectra, as well as other fluorescence-related measurements.

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15 protocols using fluoromax 3 fluorimeter

1

Stability and Photostability of Curcumin and Quercetin in Nanoemulsions

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The stability of curcumin and quercetin content in the positively (CQ_NE+) and negatively charged nanoemulsion (CQ_NE−) stored in refrigerated conditions (2–8 °C) was assessed by determining the two natural compounds’ content in the formulation at predetermined time points by HPLC for up to 30 and 120 days, respectively.
The photostability of curcumin in the same nanoemulsions was determined using curcumin solution in acetonitrile as a control. Briefly, a Hellma® Ultra Micro Cuvette (Suprasil® quartz, aperture 1.5 × 5 mm, volume 12 μL; Merck, Darmstadt, Germany) was filled either with a 4 × 10−4 M curcumin solution in acetonitrile or with CQ_NE− and CQ_NE+ formulations diluted 1:1000 in water and was exposed to 410 nm wavelength light in a Fluoromax-3 fluorimeter (Horiba Jobin Yvon, Palaiseau, France). The cuvette was transparent only in the aperture. This configuration ensured complete irradiation of the solution and excluded diffusion effects due to incomplete irradiation, as the light beam was wider than the aperture. The power of the light transmitted through the aperture of the empty cuvette was 0.36 mW. The photodegradation of curcumin was monitored by absorption spectroscopy. The measurements were performed with a PerkinElmer Lambda 650 UV/vis spectrophotometer (PerkinElmer Italia, Milan, Italy), after 3, 8, 15, 25, and 40 min of exposure, in single ray mode.
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2

Purification and Characterization of TagRFP-T and stagRFP Proteins

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TagRFP-T and stagRFP were over-expressed in the JM109 strain using pRSET-B vector at 37 °C then subsequently purified via His-tag affinity chromatography on separate Ni-NTA columns (Qiagen). The proteins were eluted using an imidazole gradient in 20 mM increments up to 200 mM imidazole. Pure fractions were concentrated via Amicon Ultra-15 filters (10,000 NMWL), stored at 4 °C in 50 mM Tris buffer with 300 mM NaCl at pH 7.4, and characterized within one month. Semi-native PAGE of stagRFP was performed using 10% polyacrylamide gels on non-boiled protein samples with minimal SDS content and stained using Coomassie Blue. Purified fluorescent proteins were simultaneously characterized by absorption (Beckman DU-650 spectrophotometer) and fluorescence (Horiba Jobin Yvon FluoroMax-3 fluorimeter). The absorbance spectra were normalized to the respective absorbance at 280 nm and the fluorescence spectra were normalized to the fluorescence maximum of TagRFP-T.
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3

Amylin Inhibition of Insulin Aggregation

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Human amylin (Calbiochem Inc., CA, USA) was dissolved in HFIP to produce a 400 μM stock solution. The stock solution was then added to 40 μM insulin B chain derived peptide (Peptron Inc., Taejeon, Korea) solutions in 10 mM sodium acetate buffer pH 6.5 (10-fold excess for peptides), or to 10 mM sodium acetate buffer alone to achieve a final concentration of 4 μM. Immediately after dilution, the samples were centrifuged for 15 min at 20 K rcf at 4 °C, and the pellet was removed. Aliquots of the reaction solutions were diluted 10-fold in a sodium acetate buffer with 0.03 μM thioflavin T (ThT). Fluorescence values were measured immediately after preparation and after 48 and 73 hours, at an excitation of 450 nm and an emission of 480 nm, using a Jobin Yvon Horiba Fluoromax 3 fluorimeter. The experiment was performed with three independent repeats. The average values are presented, with bars (in the column graph) indicating the standard deviations.
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4

Ultrafast Photophysical Characterization of Molecular Dyads

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A Shimadzu UV-2600 spectrophotometer and a Jobin Yvon Fluoromax-3 fluorimeter have been used for the collection of the steady-state absorption spectra and the emission spectra, respectively. The solid-state absorption spectra were recorded in reflecting mode using a STS-VIS-L10-400-SMA spectrograph with wavelength resolution of 0.47 nm. For the transmission and collection of light, a lab-grade optical fiber probe from Ocean Optics was used in this setup. The picosecond time-resolved spectroscopic studies have been carried out using a commercial time-correlated single-photon counting (TCSPC) setup from Edinburgh Instruments. Picosecond pulsed lasers of 633 nm and 409 nm wavelengths have been used as excitation sources in this study. The instrument response function was 80 ps. The experimental setup and methodology were discussed in detail in our earlier publications [34 (link)–35 ]. FRET between the donor (PPIX) and the acceptor (SQ2) was studied using traditional methodology [36 (link)] by calculating the Förster distance (R0 in Å). The details of the calculation procedure are mentioned in the earlier publications of our group [37 (link)–38 (link)].
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5

Steady-state Fluorescence Measurements of Lipid Binding

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Steady-state fluorescence measurements were carried out on a Fluoromax-3 fluorimeter (Jobin Yvon, Edison, NJ) at 25°C in an assay buffer composed of 25 mM Hepes pH 7.4, 100 mM NaCl and 250 µM CaCl2. All measurements were performed at 25°C. Fluorescence intensities were determined according to Lakowicz [32] . For each measurement a total volume of 1.5 ml was used and desired amounts of protein were titrated into the LUV suspension and incubated for 10 min before each measurement. NBD-PS emission spectra was obtained using a 50 µM lipid suspension, by scanning from 490 nm to 600 nm with the excitation wavelength set to 460 nm (4 nm excitation and 4 nm emission slit widths). TopFluor-PIP2 emission spectra was obtained using a 50 µM lipid suspension by scanning from 498 nm to 600 nm with the excitation wavelength set to 490 nm (4 nm excitation and 4 nm emission slit widths).The fluorescence decreases due to the change in volume produced by the addition of protein solution were corrected by subtracting the value obtained by adding the same volume of buffer without protein as a blank. The percent quenching was calculated according with the equation: where Fp and F0 are the fluorescence intensity in the presence or in the absence of protein respectively.
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6

Fluorescein Titration of Modified scFv Proteins

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Modified and unmodified 4-4-20 scFv were titrated with fluorescein as described previously.14 (link),40 (link),44 (link) Briefly, a 200-mL yeast display culture of 4-4-20 was split into two groups to generate 4-4-20 ± Cy5. The 4-4-20 concentration was determined using comparative western blotting with known amounts of protein containing an N-terminal Flag tag. Samples were then incubated with fluorescein dilutions ranging from 0.08–40 nM. Fluorescein fluorescence was quantified using FluoroMax-3 fluorimeter (Horiba). Values of Kd were determined as described previously.50 (link)
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7

FRET-based Nuclease Protection Assay

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The ability of bolas to protect nucleic acid duplexes against degradation by nucleases was assessed by Förster resonance energy transfer (FRET) based experiments following published protocol [19 ]. Quenched DNA duplexes designed against GFP in which the 3’ end of the antisense strand was labeled with Alexa-488 (fluorescent) and the 5’ end of the sense strand was labeled with Iowa Black FQ (fluorescence quencher) were used. DNA duplexes alone or complexed with bolas were treated according to the manufacturer’s protocol by RQ1 RNase free DNase and degradation of the duplexes was monitored following dequenching of Alexa-488 (λex 460 nm, λem 520 nm). The excitation slit width was kept at 2 nm and the dequenching was recorded at 30 sec intervals and the measurements were performed using Fluoromax-3 fluorimeter (Jobin-Yon, Horiba Scientific, Edison, NJ).
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8

Fluorescent enzyme activity assay

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Fluorescence emission spectra were recorded with a FluoroMax-3 fluorimeter (HORIBA) on solutions containing 1 µM enzyme, 1 mM fluoroalanine, 100 mM HEPES, pH 7.0, at room temperature, upon excitation at 412 nm, with slitex = slitem = 6 nm. Spectra were corrected for buffer and compound contribution.
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9

Determining Dissociation Constants of GyrA-DNA Complexes

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Dissociation constants of GyrA- and gyrase/DNA complexes were determined in fluorescence anisotropy titrations of 10 nM of a 60 bp DNA with GyrA in absence or presence of 8 μM GyrB in 50 mM Tris–HCl pH 7.5, 100 mM KCl, 10 mM MgCl2 at 37°C using a Fluoromax 3 fluorimeter (Jobin Yvon, Germany). The DNA was labeled with Alexa488 and Alexa546 and contained a preferred gyrase cleavage site in the center (18 (link),39 (link)). Alexa546 fluorescence was excited at 555 nm (bandwidth 3 nm), and detected at 571 nm (bandwidth 6 nm). To determine Kd values, binding isotherms were analyzed using a one-to-one binding model as described previously (18 (link)). Experiments were performed in duplicate; errors (±) represent the error of the mean.
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10

Guanidine-Induced Protein Unfolding Assay

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A stock solution of 8 M guanidine hydrochloride (Sigma Aldrich), pH 7 was used in the unfolding experiments. By using varying amounts of guanidine and buffer (10 mM HEPES, 150 mM NaCl, pH 7) the protein (final concentration of 5 μM) was equilibrated in 0 M—7 M guanidine HCl (GdnHCl) for 24–72 hours at room temperature. Oxidized unfolding experiments were performed with air-oxidized protein. For the reduced unfolding experiments, protein samples were pre-reduced with dithiothreitol (DTT), and a final concentration of 1 mM DTT was added to each protein/guanidine solution to keep the protein in its reduced state. The reduced samples were also prepared and allowed to equilibrate an MBraun glovebox.
A Horiba Jobin Yvon FluoroMax 3 fluorimeter was used to collect the fluorescence unfolding data, using a 5 mm x 5 mm path length quartz cuvette, thermostated at 25°C with a water circulator. An excitation wavelength of 280 nm was used with a 2 mm slit width, and emission spectra were collected at 300–450 nm (3 mm slit width). Data was taken every 1 nm with a 0.5 sec integration time.
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