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7 protocols using pf 04217903

1

High-Throughput Kinase Inhibitor Screening

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Foretinib (GSK1363089, EXEL2880, XL880; Chemietek), cabozantinib (XL184, BMS-907351; Chemietek), motesanib free base (AMG-706; Selleckchem), PF-04217903 (Selleckchem), barasertib (AZD1152-HQPA; Selleckchem), trametinib (GSK1120212; Chemietek), GSK1838705A (Selleckchem), PF-573228 (Selleckchem), linsitinib (OSI-906; Chemietek) and alisertib (MLN-8237; Selleckchem) were dissolved in DMSO (10 mM). Drug dilutions were made in DMSO as necessary.
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2

Cell line authentication and treatment

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HL60 cells were kindly provided by Dr. G. Reuther (Moffitt Cancer Center, Tampa FL) and were cultured in IMDM (20% FBS). U937 cells were a kind gift from Dr. G. Superti-Furga (CeMM, Vienna, Austria) and were cultured in RPMI 1640 (10% FBS). Cell line authentication was done by short-tandem repeat (STR) analysis. Tivantinib (Moffitt Chemistry Core and ChemieTek), ABT-199 (ChemieTek), PF-04217903 (Selleckchem) and 6-bromoindirubin-3′-oxime (BIO, Cayman Chemical) were dissolved in DMSO (10 mM) and LiCl and NaCl (Sigma-Aldrich) were dissolved in sterile diH2O (10 M and 6 M, respectively).
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3

MET Antibody Expression in CHO Cells

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Hs746t and MKN45 cells were obtained from ATCC (Manassas, VA) and Japan Health Sciences Foundation, Health Science Research Resources Bank (Osaka, Japan), respectively. PF04217903 and savolitinib were obtained from Selleck Chemicals (Houston, TX) and ChemieTek (Indianapolis, IN), respectively. Humanized one-armed OA-5D5 MET antibody was expressed in CHO cells [16 (link)].
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4

Modulation of Lipid Metabolism Pathways

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Reagents Sorafenib (multikinase inhibitor), T0901317 (LXR pan-agonist), GW3965 (LXR pan-agonist), PF-04217903 (ATP-competitive Met inhibitor), Gefitinib (EGFR-tyrosine kinase inhibitor), MK-2206 (Akt1/2/3 inhibitor), SCH772984 (ERK1/2 inhibitor), and SB202190 (p38 MAPK Inhibitor) were purchased from Selleck Chemicals (Houston, TX, US). Antibodies against LXRα and LXRβ were purchased from Abcam cooperation (Cambridge, UK). All other antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Puromycin and TRIzol reagent were purchased from Thermo Fisher Scientific (Grand Island, NY, USA). Cell Counting Kit-8 (CCK-8) was purchased from Dojindo Laboratories (Mashikimachi, kamimashiki gun Kumamoto, JAPAN). PI/RNase Staining Buffer and FITC Annexin V Apoptosis Detection Kit were purchased from BD Biosciences (San Diego, CA, USA). Cholesterol Assay Kit was purchased from Invitrogen (San Diego, CA, USA). BCA Protein Assay Reagent was purchased from Beyotime Biotechnology (Shanghai, China).
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5

Comprehensive In Vitro and In Vivo Evaluation of Novel Compounds

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For in vitro assays, NZ001 was obtained from Nanjing Zhongrunyuan Pharmaceutical Company (Nanjing, Jiangsu, China). XL184, sorafenib and PF-04217903 were purchased from Selleck Chemicals (Houston, TX, USA). Goat anti-mouse VEGF antibody (AF-493-NA) was purchased from R&D Systems (Minneapolis, MN, USA). NZ001, XL184 and PF-04217903 were prepared as a 20-mM stock solution in DMSO (Sigma-Aldrich, St. Louis, USA) for in vitro studies. For in vivo studies, NZ001 was formulated in sterile ddH2O and administered via oral gavage at 10 mg/kg or 30 mg/kg. sorafenib was dissolved in Cremophor EL/ethanol (50:50; Sigma Cremophor EL, 95% ethyl alcohol) at 4-fold (4×) the highest dose. The final dosing solutions were prepared on the day of use by diluting to 1× with ddH2O and were administered via oral gavage at 30 mg/kg. VEGF antibody was injected intraperitoneally 3 times per week at 7.5 mg/kg. Recombinant human HGF, mouse HGF and human VEGF were obtained from R&D Systems (Minneapolis, MN, USA). All information of primary antibodies used for Western blot and immunoprecipitation were shown on Additional file 1: Table S1. All secondary antibodies were purchased from Jackson ImmunoResearch (Philadelphia, PA, USA).
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6

Gastric Cancer Cell Lines and Inhibitors

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NCI-N87, HGC-27 and SGC-7901 human GC cells were obtained from the Cell Bank of Type Culture Collection of Chinese Academy of Sciences (Shanghai, China). KATOIII, SNU16, MKN-45 and MKN-28 GC cells were obtained from 3DBiopharm Biotech Co. Ltd. (Shanghai, China). Cells were cultured in Minimum Essential Medium (HGC-27) or Roswell Park Memorial Institute 1640 medium containing 10% fetal bovine serum (rest of the cells) and 1% penicillin-streptomycin at 37°C in a humidified atmosphere with 5% CO2. AZD4547, AZD8931, erlotinib and PF04217903 were purchased from Selleck Chemicals (Houston, TX, USA). Cetuximab was provided by Bristol-Myers Squibb (New York City, NY, USA). Recombinant human HGF, EGF, NRG1, PDGF and IGF-1were purchased from PeproTech (Rocky Hill, NJ, USA). The compounds were dissolved in 100% dimethyl sulfoxide (DMSO; Sigma-Aldrich, St Louis, MO, USA) and diluted with culture medium to the desired concentration, with a final DMSO concentration < 0.2% (v/v). DMSO was also added to the control cells in culture.
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7

Cell Growth Assays of Tumor Cell Lines

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Cell growth assays Tumor cells were plated at low density (5000 cells for HCmel12, MC38 and LLC and 2000 cells for B16F1 and 4T1.2) in 12-well plates and treated with capmatinib (INC280) or PF-04217903 (both from Selleck Chemicals) at indicated concentrations or vehicle control for 6 days. Dishes were stained with a standard crystal violet staining procedure. In brief, cells were washed with PBS, fixed in 4% formaldehyde solution and stained with 0.05% crystal violet in water for 30 min. Stained dishes were washed three times with water to remove background staining. Colonies were scanned and quantified using the Odyssey SA Infrared Imaging System (LICOR Biosciences).
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