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17 protocols using x tremegene hp dna transfection reagent

1

LKB1 Overexpression Protocol

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The cells were transfected with either full‐length pcDNA3.1‐LKB1 or pcDNA3.1 empty vector in Opti‐MEM (Gibco) using the X‐tremeGENE HP DNA Transfection Reagent (Invitrogen, Life Technologies) until 70–80% confluence was attained. After 6‐h incubation at 37 °C, the compound was eliminated, and the cells were incubated for additional 24 h.
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2

Stable miR-345 Overexpression and Inhibition

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For the generation of stably miR-345-overexpressing cell lines, MiaPaCa and Panc1 cells were transfected with miR-345 expression (pCMV-miR-345) or control (pCMV-Neo) plasmid (Origene, Rockville, MD, USA) using X-tremeGENE HP DNA transfection reagent (Roche, Indianapolis, IN, USA) as per the manufacturer's instructions. Stable populations of transfected cells were selected in media containing 200 μg ml−1 of G418 (Gibco, Grand Island, NY, USA), expanded and examined for stable miR-345 overexpression. For inhibition of miR-345 function, miR-345-overexpressing cells (Panc1-miR-345 and MiaPaCa-miR-345) were transiently transfected with anti-miR-345 or miRNA inhibitor negative controls (Ambion, Austin, TX, USA) at 30 nM concentration using X-tremeGENE HP DNA transfection reagent. For BCL2 overexpression, cells were transiently transfected with pcDNA3-BCL2 construct (lacking 3′UTR region) generated by Stanley Korsmeyer Laboratory (procured through Addgene, Cambridge, MA, USA, plasmid # 8768) or pcDNA3 (Invitrogen) as a control vector using X-tremeGENE HP DNA transfection reagent.
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3

siRNA Targeting of NCBP1, CUL4B, NCBP3

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Oligonucleotides of siRNA targeting NCBP1, CUL4B, NCBP3 and the corresponding control siRNA were obtained from Obio Technology. The sequences were presented as follows: cells were transfected at 50% confluence using Lipofectamine 2000 (Invitrogen) with a final siRNA concentration of 50 nM. NCBP1, CUL4B and NCBP3 expression plasmids were transiently transfected with X‐tremeGENE HP DNA Transfection Reagent (Invitrogen) following the manufacturer's recommendations.
Lentiviruses encoding NCBP1, NCBP1‐shRNA (sh‐NCBP1) and control shRNA (sh‐NC) were obtained from HanBio Biotechnology Co., Ltd. shRNA sequences are shown below. Cells were transfected at 50% confluence with a final lentivirus multiplicity of infection (MOI) of 20 for shRNAs. siRNA target sequences were as follows: NCBP1 (#1: 5′‐CCACAGATGATTGCTGTACTA‐3′, #2: 5′‐CAGGAACGGCACATCCTAAGA‐3′); NCBP2: 5′‐GCCAUGCGGUACAUAAAUG‐3′; NCBP3: 5′‐AAGAGCCGGTTAGATAACTTA‐3′; CUL4B: 5′‐GCCACGTACCGATACAGAAGA‐3′; shRNA target sequences were as follows: NCBP1 (#1: 5′‐ATGACTATGTATGCTGACGAA‐3′, #2: 5′‐CAGATTGAAGTTAGTCGGGAA‐3′).
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4

Differential Display Transfection Assay

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For differential display (Figure 4), HEK293 cells were transfected with control siRNAs (Sense; 5′-CAGCGACUAAACACAUCA-3′ Antisense; 5′-UUGAUGUGUUUAGUCGCUGTT-3′) or TBX3 specific siRNA A (Sense: GACCAUGGAGCCCGAAGAA, Antisense: UUCUUCGGGCUCCAUGGU) or CAPERα-specific siRNA (Sense: GACAGAAAUUCAAGACGUU, Antisense: AACGUCUUGAAUUUCUGUC) using lipofectamine 2000 (Invitrogen) or X-treme GENE HP DNA transfection reagent as per manufacturer's instructions.
HNRNP A1 siRNA for knockdown in HFFs (Figure 6) was obtained from Cell Signaling (cat. #7668).
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5

Manipulating ACYP2, PMCA4, and PTP1B expression

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Oligonucleotides of siRNAs targeting ACYP2, PMCA4 and PTP1B were obtained from Gene Pharma (Shanghai, China) and Ribobio (Guangzhou, China), respectively. The sequences were presented in Additional file 1: Table S3. Cells were transfected at 50% confluence using Lipofectamine 2000 (Invitrogen, Grand Island, NY) according to the instructions of the manufacturer, with a final siRNA concentration of 50 nM. All silencing experiments were carried out in triplicate. Two oligonucleotides with maximal knockdown efficiency were selected among three different sequences.
Open reading frame (ORF) of ACYP2 with stop codon was amplified and then cloned into pcDNA3.1(−) mammalian expression vector, termed pcDNA3.1(−)-ACYP2. The primer sequences were shown in Additional file 1: Table S4. Cells were transfected with the indicated constructs at 70% confluence using X-treme GENE HP DNA Transfection Reagent (Invitrogen, Grand Island, NY) according to the instructions of the manufacturer. Lentivirus encoding shRNA targeting ACYP2 and control lentivirus were obtained from HanBio Biotechnology Co., Ltd. (Shanghai, China). Cells were transfected at 50% confluence with a final lentivirus multiplicity of infection (MOI) of 50–100 according to the instructions of the manufacturer. Cells stably knocking down ACYP2 were selected by puromycin.
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6

Overexpression and Knockdown of IGF1R

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The plasmid expressing IGF1R (pLVX-AcGFP1-IGF1R) and empty vector were obtained from MiaoLingBio (Wuhan, P.R. China). Cells were plated at approximately 60%-80% confluence in a 6-well plate and transfected with 2 μg of the above plasmids with X-tremeGENE HP DNA Transfection Reagent (Invitrogen). Functional experiments were carried out 48 h after transfection.
Oligonucleotides of siRNA targeting IGF1R (si-IGF1R) and control siRNA (si-NC) were purchased from RiboBio Co., Ltd. (Guangzhou, P. R. China). Cells were transfected with a final siRNA concentration of 80 nmol/L with X-tremeGENE siRNA Transfection Reagent (Roche Diagnostics GmbH, Mannheim, Germany). The sequences of siRNA were presented in Supplementary Table 3.
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7

Macrophage Differentiation and Genetic Manipulation

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THP-1 cells were incubated with 350 nM phorbol 12-myristate 13-acetate (PMA) for 24 h to induce the differentiation of M0 macrophages. Lentivirus particles containing pcDNA-NBR2 or the miR-19a mimic were designed and prepared by GenScript Biotechnology Co. Ltd. Then, 24 h prior to transfection, the M0 macrophages were seeded in a 6-well culture plate. Lentivirus particles were transfected using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) and X-tremeGENE HP DNA Transfection Reagent (Invitrogen), according to the manufacturer's instructions. After 24 and 48 h, the cells were collected and subjected to further analysis. The assays were performed in triplicate, and more than nine wells were treated with the same type of lentiviral particles. Lentivirus particles containing pcDNA-NC or NC mimics were used as controls.
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8

Immunofluorescence Assay for FMDV Type O Detection in BHK-21 Cells

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Baby hamster kidney cells (BHK-21) were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal calf serum (FCS) in a six-well tissue culture plate under 5% CO2 at 37°C. BHK-21 cells were transfected using the X-tremeGENE HP DNA transfection reagent (Roche) per the manufacturer's instructions. In brief, 2 μg plasmid pRc/CMV-VP1 in 100 μl OPTI (Invitrogen) was mixed with 6 μl X-tremeGENE HP DNA transfection reagent at room temperature and incubated for 20 min. The DNA/transfection reagent complexes were slowly added to cells and incubated for 48 h. The cells in each well were fixed with an ice-cold acetone and methanol mixture (1∶1) for 30 min at -20°C. After being washed three times with 0.01 M pH 7.2 Phosphate Buffered Saline with Tween 20 (PBST) (containing 0.05% Tween-20), primary rabbit anti-FMDV type O-IgG antibody (LVRI) (1∶50 Phosphate Buffered Saline, PBS) was applied to the wells for 1 h at 37°C. The cells were then washed three times and incubated with FITC-conjugated goat anti-rabbit-IgG (Sigma) (1∶200 in PBS) for 30 min at 37°C. The cells were then washed five more times. The cells were examined under an Olympus fluorescence microscope.
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9

Estrogen Receptor Transcriptional Assay

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Cells after 3 days in ED-medium were transfected overnight with oestrogen responsive element (ERE)–luciferase and β-galactosidase constructs using X-treme GENE HP-DNA transfection reagent (Invitrogen) in phenol red-free Opti-MEM reduced-serum medium (HyClone, Logan, UT) as previously described18 (link). Cells were then treated for additional 24 h with ED, E2 (10–9 M), or 10% FBS, plus tamoxifen (10–7 M), fulvestrant (10–7 M), or AZD9496 (10–7 M). Relative luciferase activity was determined and analysed as previously described18 (link).
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10

Constructing NCOA3 Expression Plasmid

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To construct NCOA3 expression plasmid, the corresponding open reading frames (ORFs) was ampli ed by PCR, for 37 cycles of 98°C for 10 seconds, 60°C for 15 seconds, and 68°C for 5 min and then cloned into the NheI and XhoI sites of pcDNA3.1(-) vector (Invitrogen, Grand Island, NY), which was designated as pcDNA3.1(-)-NCOA3. The primers used for plasmid construction were shown in Supplementary Table 2. To determine the role of NCOA3 in controlling cell growth and proliferation, we chose 8505C cells, which showed low-expression of NCOA3. 8505C cells were transfected with the indicated constructs at 70% con uence using X-tremeGENE HP DNA Transfection Reagent (Invitrogen, Grand Island, NY), with empty vector as control. Geneticin was used for resistance screening of stable transfected cells.
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