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9 protocols using horseradish peroxidase conjugated rabbit anti mouse igg

1

Quantification of Glycolipid-Anchored uPAR Isoforms

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Frozen tissue was pulverised using a dry ice cooled tissue homogeniser. The tissue powder preparations were lysed using temperature induced phase separation in Triton X-114 containing buffer (0.1 M Tris/HCl, pH 8.1, 1% Triton X-114, 10 mM EDTA, 10 µg/mL aprotinin and 1 mM phenyl-methyl-sulfonyl fluoride; 10 mL buffer/g frozen tissue) [22 (link)]. uPAR (I−III) and uPAR (II−III) separate to the detergent-phase because of their glycolipid anchor. The detergent-phases were chemically reduced, de-glycosylated using N-glycosidase F (Roche Diagnostic, Mannheim, Germany) and analysed by Western blotting using the monoclonal antibody S1 [23 (link)]. Detergent-phase from 2.5 mg tissue was loaded in each lane. Detergent-phase from 5 × 105 cells of the human histiocytic lymphoma cell line U937 was loaded as control [23 (link)]. The proteins were separated on 4–12% SDS-PAGE and were electroblotted onto polyvinylidene difluoride membranes using the iBlot system (Life Technologies) and Western blotting conducted essentially as described [24 (link)] using 2 μg/mL of S1 and 1.3 μg/mL horseradish peroxidase conjugated rabbit anti-mouse IgG (P0161, Dako, Glostrup, Denmark).
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2

Immunohistochemical Quantification of PMN

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To detect polymorphonuclear cells (PMN) in kidney and liver, immunohistochemistry was performed on 5 μm tissue cryosections. Sections were fixated for 10 min using acetone. Next, sections were stained with HIS-48 mAb (supernatant, two times diluted) using an indirect immunoperoxidase technique. Endogenous peroxidase was blocked using H2O2 0.01% in phosphate-buffered saline for 30 min. After thorough washing, sections were incubated with horseradish peroxidase-conjugated rabbit anti-mouse IgG as a secondary antibody for 30 min, followed by goat anti-rabbit IgG as a tertiary antibody for 30 min (both from Dako, Glostrup, Denmark). The reaction was developed using 9-amino-ethylcarbazole as chromogen and H2O2 as substrate. Sections were counterstained using Mayer hematoxylin solution (Merck, Darmstadt, Germany). Negative antibody controls were performed. Localization of immunohistochemical staining was assessed by light microscopy. For each tissue sample, positive cells were counted in 10 microscopic random fields of the tissue at 40x magnification. Results were presented as number of positive cells per glomerulus in the kidney and number of positive cells per area (μm2) in the liver.
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3

NTCP Extracellular Domain Characterization

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Regions of extracellularly exposed N terminus and extracellular loops were determined as results of prediction of transmembrane helices in NTCP using TMHMM Server v. 2.0 (https://services.healthtech.dtu.dk/service.php?TMHMM-2.0; data not shown). Streptavidin-coated 96-well plates (Thermo Scientific; 436014) were used to capture each peptide at 10 μg/mL in PBS at room temperature for 2 h and washed five times with 0.1% Tween 20/PBS (PBST). Wells were then blocked with 200 μL of Nacalai Bullet Blocking One for 30 min. Recombinant N6HB426-20 mIgG2a MAb and control mouse IgG (Equitech-Bio; SLM66) were diluted into 5% Nacalai Bullet Blocking One in PBST. After discarding the blocking reagent solution, wells were incubated with 100 μL of antibody-diluted solution (1 μg/mL of IgG in PBST) overnight at 4°C and then washed five times with PBST. Bound IgG was detected with 100 μL of horseradish peroxidase-conjugated rabbit anti-mouse IgG (Dako; P0260) diluted 1:1,0000 in PBST for 3 h at room temperature and then washed five times with PBST. One-step Ultra TMB-ELISA (100 μL/well; Thermo Scientific; 34028) was added to the wells and allowed to develop at room temperature for several minutes. The reaction was stopped with 100 μL of 2 M H2SO4. Optical density (OD) was read at 450 nm on a microplate reader (Bio-Rad; model 680).
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4

Detecting Polymorphonuclear Cells in Kidney and Liver

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To detect polymorphonuclear cells in kidney and liver, immunohistochemistry was performed on 5- μm tissue cryosections. Sections were fixated for 10 min using acetone. Next, sections were stained with HIS-48 mAb (supernatant, two times diluted) using an indirect immunoperoxidase technique. Endogenous peroxidase was blocked using H 2O2 0.01% in phosphate-buffered saline for 30 mins. After thorough washing, sections were incubated with horseradish peroxidase-conjugated rabbit anti-mouse IgG as a secondary antibody for 30 mins, followed by goat anti-rabbit IgG as a tertiary antibody for 30 mins (both from Dako, Glostrup, Denmark). The reaction was developed using 9-amino-ethylcarbazole as chromogen and H 2O2 as substrate. Sections were counterstained using Mayer hematoxylin solution (Merck, Darmstadt, Germany). Negative antibody controls were performed. Localization of immunohistochemical staining was assessed by light microscopy. For each tissue section, positive cells per field were counted in 10 microscopic fields of the tissue at 40x magnification. Results were presented as number of positive cells per glomerulus in the kidney and number of positive cells per field in the liver.
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5

Quantifying 3-Nitrotyrosine in Ischemic Myocardium

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This was assessed by measuring 3-nitrotyrosine (3-NT) formation using Western blot. Tissue samples (70 mg), taken from the ischaemic myocardium within 2 min of reperfusion, were prepared as described previously (Kiss et al., 2010 (link)). The formation of 3-NT was assessed from 25 μg of total protein loaded onto SDS-PAGE gel (10%) and transferred to PVDF membrane. Mouse monoclonal anti-nitrotyrosine was used as primary antibody (diluted to 1:3000; Chemicon, Millipore, USA), and horseradish peroxidase-conjugated rabbit anti-mouse IgG (diluted to 1:1000, Dakocytomation, Denmark) was used as a secondary antibody. The blot was developed with an enhanced chemiluminescence kit (ECL Plus, GE Healthcare, UK), exposed to X-ray film and scanned. The intensity of the 3-NT bands was determined using Image J software, and expressed in percentage of the sham-operated animals. Equal loading of the samples was controlled by Coomassie Brilliant Blue staining, and normalized for total protein. Protein samples, isolated from four dogs in each experimental group, were used for western blot. The measurements were repeated three times in each dog, and the results were averaged. Data obtained from the individual dogs within a group were also averaged, and these means served for the comparison among the groups.
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6

ELISA for Antibody Titration

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Serum was prepared from blood obtained from mice at day 0, day 18, day 33 and day 63. Antibody titres were measured using enzyme linked immunosorbent assay (ELISA) as per methods described in Chua et al. (2011) (link). Briefly, ELISA plates (Nunc, Thermo Scientific) were coated overnight with 5 µg/ml protein diluted in PBSN3 and blocked with BSA10PBS for 2 h at room temperature. Plates were washed with PBS containing 0.05% Tween-20 (PBST). Neat sera were sequentially diluted in BSA5PBST and incubated at room temperature for 6 h. Bound antibody was detected by adding horse radish peroxidase conjugated rabbit anti-mouse IgG (Dako, Glostrup, Denmark) or rat anti-mouse IgM, IgG1, IgG2a, IgG2b or IgG3 antibodies (Southern Biotech, USA) at a concentration of 1:400 in BSA5PBST for 2 h. Plates were developed with developing solution (hydrogen peroxide, citric acid and ABTS) and incubated for 10-15 min with gentle agitation to observe a colour change. The reaction was stopped with 50 mM sodium fluoride. Plates were read at dual wavelengths of 505 and 595 nm on plate reader (LabSystems Multiskan Multisoft microplate reader). The titers of antibody are expressed as the reciprocal of the highest dilution of serum required to achieve an OD600 of 0.2.
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7

Cell-based ELISA for DENV Inhibition

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Cell-based ELISA was carried out to determine the inhibitory effect. After 48 h of virus infection without or with gallic acid (Sigma-Aldrich Corporation, St. Louis, MO, USA), herb extracts, or Triphala formulation treatment, the infected cells were harvested and stained for intra-cellular viral protein antigen. The infected cells were fixed with 4% paraformaldehyde at room temperature for 15 min and washed twice with ice-cold phosphate-buffered saline (PBS) before permeabilized with 0.2% Triton X-100 (15 min at room temperature). The cells were blocked with 1% bovine serum albumin (BSA) in PBS for 30 min and incubated for at least 3 h with monoclonal anti-DENV E antibody clone 4G2 at 37 °C. Cells were washed three times with PBS containing 0.5% Tween-20 (PBST) and further incubated for 30 min followed by horseradish peroxidase-conjugated rabbit anti-mouse IgG (Dako, CA, USA) (at 1:2000 dilution). Cell plates were washed before adding TMB (3,3,5,5-tetramethylbenzidine) substrate (Invitrogen, Carlsbad, CA, USA), and the absorbance at an optical density (OD) of 650 was measured, wherein the mock control was set as blank. The absorbance was used to calculate the % E antigen compared to that of the non-treatment control (set as 100% E antigen) as the following equation:
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8

Quantification of Nitrotyrosine by Western Blot

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This was performed by the measurement of nitrotyrosine formation using Western immunoblot as described previously [22 (link)]. In brief, after tissue preparation (homogenization and centrifugation) the supernatant was collected and the protein concentration was determined by the Lowry method. Following electrophoresis the proteins were transferred onto PVDF membrane. After incubation with a monoclonal anti-nitrotyrosine antibody (MAB5404, Chemicon, USA), and horseradish peroxidase-conjugated rabbit anti-mouse IgG (P0161, Dakocytomation, Denmark) as the secondary antibody, the membrane was developed with an enhanced chemiluminescence kit (ECL Plus, GE Healthcare, UK), exposed to X-ray film and scanned. ImageJ (NIH, Bethesda, MD) was used to determine the density of nitrotyrosine bands. Equal loading was controlled using Coomassie Blue staining.
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9

Quantifying Circulating FHR-5 Levels

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Circulating FHR-5 was detected by enzyme-linked immunosorbent assay as previously described. 17 Briefly, rabbit anti-human FHR-5 antibody (Abnova Corporation, Taipei, Taiwan) was coated onto half the wells of a microtitre plate (Nunc Immunoplate, Roskilde, Denmark). After blocking with 1% bovine serum albumin (Sigma Chemical Company, St. Louis, MO), the plasma samples were added and incubated for 1 hour at room temperature. Binding of FHR-5 was examined using mouse anti-human FHR-5 antibodies (Abnova Corporation). Following the addition of horseradish peroxidaseconjugated rabbit anti-mouse IgG (DakoCytomation, Glostrup, Denmark), the reaction was developed using the peroxidase chromogenic substrate 3,3 0 ,5,5 0 -Tetramethylbenzidine Liquid Substrate System (Sigma Chemical Company) and stopped with 1 mol/l sulfuric acid before the absorbance was measured at 450 and 570 nm. Serial dilutions of recombinant human FHR-5 protein (R&D Systems, Minneapolis, MN) were used to establish the standard curve, which was then used to calculate circulating FHR-5 levels.
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