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6 protocols using anti p53

1

Immunohistochemical Analysis of Mouse Kidney

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Paraffin-embedded mouse kidney sections (3 µm thickness) were prepared by routine procedures. The sections were stained with periodic acid-Schiff (PAS) reagents by standard protocol. For immunohistochemical staining, kidney sections were deparaffinized with xylene, and then gradually rehydrated in ethanol. Hydrogen peroxide (3%) was used to eliminate endogenous peroxidase. Antigen retrieval was performed by microwave using the heat mediated antigen retrieval technique. After blocking with 1% donkey serum for 1 h, the sections were incubated with primary antibodies overnight at 4°C and subsequently washed and incubated with secondary antibodies for 1 h at room temperature. The sections were visualized by using AEC substrate Kit under an Olympus light microscope. The primary antibodies were as follows: anti-Coronavirus nucleocapsid (sc-66012; Santa Cruze Biotechnology), anti-KIM-1 (AF1817; R&D Systems), anti-p53 (A0263; Abclonal), anti-caspase-3 (A2156; Abclonal).
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2

Western Blot Analysis of Key Cellular Proteins

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Cell protein lysates were generated using RIPA Lysis Buffer (Beyotime, China). Cellular proteins were extracted 72 h after transfection. Western blotting was performed as reported previously 45 (link). Five μg proteins were boiled in 5 × SDS buffer for 5 min, separated by SDS-PAGE, and transferred to PVDF membranes (Millipore, USA). Then, the membranes were blocked with skim milk and probed with Anti-p53 (A0263, abclonal, USA), Anti-NFAT5 (Bs-9473R, bioss,China), Anti-β-catenin (Ab32572, Abcam, USA), Anti-c-myc (Ab32072, Abcam, USA), Anti-Bcl-2 (12789-1-ap, Proteintech, China). β-actin (ab8226, Santa Cruz, USA) was used as a loading control. The results were visualized with horseradish peroxidase-conjugated secondary antibodies (Santa Cruz) and enhanced chemiluminescence. All blots were performed in triplicate and protein expression levels were quantified relatively to the expression of β-actin using the Image J 1.42q software (Wayne Rasband).
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3

Western Blotting for Protein Analysis

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Western Blotting was conducted as previously described (Pang et al., 2017 (link)). Briefly, proteins were extracted from cells and cochlea tissues using radioimmunoprecipitation assay lysis buffer (Thermo plus, USA). Protein samples (20 μg) were resolved on a 10% SDS-polyacrylamide gel and transferred onto polyvinylidene fluoride membranes (Millipore, Burlington, MA, USA). After being blocked with 5% nonfat milk, the membranes were incubated with anti-DRP1 (1:1,000, Proteintech, Rosemont, IL, USA), anti-p-DRP1 (1:1,000, Abclonal, Woburn, MA, USA), anti-LC3I/II (1:1,000, CST, USA), anti-P62 (1:1,000, CST, USA), anti-P53 (1:1,000, Abclonal, Woburn, MA, USA), and anti-P21 (1:1,000, Abclonal, Woburn, MA, USA) at 4°C overnight, followed by incubation with secondary antibodies (1:3,000) at room temperature for 1 h. The immunoreactive bands were then detected by enhanced chemiluminescence (Millipore, Burlington, MA, USA). Band intensities were analyzed using ImageJ (NIH, USA). β-actin was applied as loading and internal control.
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4

Quantifying Protein Expression in Cells

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Cells were harvested and lysed in lysis buffer for protein extraction. Protein concentrations were measured by BCA protein assay kit (Thermo Scientific). Proteins were separated by SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. The membranes were incubated with primary antibodies: rabbit anti-SIRT1 (Millipore), anti-BECN1 (Abclonal Technology), anti-LC3B (Cell Signaling Technology), anti-p16 (Abclonal Technology), anti-p21 (Abclonal Technology), anti-p53 (Abclonal Technology), and mouse anti-β-actin (Sigma) followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies (HRP-donkey-anti-rabbit and HRP-donkey-anti-mouse) (Santa Cruz Biotechnology). Signal was detected by an ECL kit. The experiments were performed three times.
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5

Western Blot Analysis of Cellular Proteins

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Fibroblasts were lysed in an RIPA buffer containing Protease Inhibitor Cocktail (Roche). Sample proteins (20 μg) were separated by SDS-PAGE and then transferred to PVDF membranes. After blocking in 10% nonfat milk for 1 h at room temperature, membranes were incubated with primary antibodies overnight at 4 °C or 2 h at room temperature. The membranes were then incubated with horseradish peroxidase-labeled secondary antibodies and visualized with ECL. The following primary antibodies were used: anti-p-Stat3(1:1000, CST, Danvers, MA, USA), anti-Stat3(1:1000, CST, Danvers, MA, USA), anti-α-SMA(1:4000, Abcam, Cambridge, UK), anti-p53(1:800, Santa, CA, USA), anti-vimentin(1:1000, Abclonal, Wuhan, China), anti-p21(1:1000, BD, Franklin, NJ, USA), anti-p16(1:1000, SAB, College Park, MD, USA) and anti-GAPDH (1:3000, Abclonal, Wuhan, China). The relative expression was normalized to GAPDH expression.
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6

Chromatin Immunoprecipitation for H3K9me3 and p53

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Chromatin immunoprecipitation (ChIP) assays were performed using the EZ-ChIP Kit from Millipore according to the manufacturer’s protocol. Samples were assessed by applying anti-H3K9me3 (Cat #13969, Cell Signaling Technology), and anti-p53 (A0263, Abclonal) antibodies.
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