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2 protocols using ethylene diamine tetraacetic acid (edta)

1

Immunoprecipitation Protocol for Antioxidant Enzymes

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For immunoprecipitation pre-treatment using the sample with protein quantification, homogenization was performed after adding 0.5 M EDTA (Duksan, Korea), lysis buffer (Gendepot, R4200-100, USA), and phosphatase inhibitor 100 × (Gendepot, P3200-001, USA) to the sample. After adding 200 μg/ml each of Cu-Zn-SOD and GPx, which are the primary antibodies, into the homogenized sample of 1ml, the mixture was left over-night (12 hours) at 4℃. After inserting 30 μl of Beads (Dynabeads, Protein A) and 1 × PBS of 500 μl in the sample left over-night and incubating at 4℃ for 1 hour, the incubated sample was washed 3 times for 5 minutes with 1 × PBS using a magnetic particle concentrator. 1 × PBS of 50 μl was added to the washed sample, and the samples were quantified by mixing with Laemmli sample buffer. Western blotting for the Cu,Zn-SOD (Santa cruz, sc-11407, USA) and GPx (Santa cruz, sc-22145, USA), which are primary antibodies, and their secondary antibodies were performed according to the manufacturers’ instructions. Identification of the band was developed on X-ray film after illuminating a membrane using an enhanced chemiluminescene (ECL) kit. The density of the developed band was calculated by band/β-actin using image j software.
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2

DNA Primer and Protein Plasmid Protocol

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DNA primers and oligonucleotides were purchased from COSMOGENETH (Seoul, Korea). The fluorescent protein plasmid for mScarlet was purchased from Addgene (Watertown, MA). Neutravidin was purchased from ThermoFischer Scientific (Waltham, MA). Enzymes and λ DNA (48.5 kb) were purchased from New England Biolabs (Ipswich, MA). Tryptone and Luria-Bertani broth (LB) were purchased from Becton, Dickinson and Company (Franklin Lakes, NJ). Low melting point (LMP) agarose was purchased from Invitrogen (Carlsbad, CA), and agarose was from Young Sciences, Inc. (Bucheon, Korea). Epoxy was from Permatex (Solon, OH). N-[3-(Trimethoxysilyl)propyl]ethylenediamine was purchased from Acros organics (Fair Town, NJ). Ni-NTA agarose resin and disposable column (empty gravity column) were purchased from Qiagen (Hilden, Germany). Biotin-PEG-succinimidyl carbonate and PEG-succinimidyl valerate were purchased from Laysan Bio Inc (Arab, AL). Sodium chloride, EDTA, and glacial acetic acid were purchased from Duksan (Ansan, Korea). H2O2, H2SO4 and 99.8% ethanol were purchased from JIN Chemical (Hwaseong, Korea). n-Dodecyl-β-d-maltopyranoside (DDM) were purchased from Goldbio (St. Louis, MO). N-Octyl-β-maltopyranoside (OM) were purchased from Anatrace (Maumee, OH). Glutaraldehyde, sodium bicarbonate, thiamine HCl, and other chemicals were purchased from Merck (Darmstadt, Germany).
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