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2 protocols using h3k9 3me

1

Immunofluorescence Analysis of Meiotic Markers in Mouse Spermatocytes

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The spermatocyte spreads and seminiferous tubules squashes were blocked for 30 min with 1% BSA and 0.05% Tween in PBS (PBS-T) and then were incubated overnight at 4 °C with the following primary antibodies: Sycp3 (Abcam, ab15093 and ab97672, 1:800; and Santa Cruz, sc-20845, 1:20); Sycp1 (Abcam, ab15087, 1:800) Dmc1 (Santa Cruz, sc-22768, 1:50); Trf1 (Alpha Diagnostics, TRF12-S, 1:50); Sun1 (Abcam, ab103021, 1:50); H1t (gift from Dr Mary Ann Handel, The Jackson Laboratory, Bar Harbor, Maine, USA, 1:200) H3K9-3me (Milipore, 05-1250, 1:2000); γH2AX (Milipore, 05-636, 1:300); Mlh1 (Becton Dickinson, 551091, 1:100); Rad51 (Santa Cruz, sc-8349, 1:100) Terb-1 (affinity-purified rabbit antiserum, 1:100)34 (link) and Cdk2 (Abcam, ab7954, 1:50). RingoA was detected using the R55A mouse monoclonal antibody12 (link), which recognizes the sequence NDHQSNK corresponding to amino acids 283-289 (hybridoma supernatant, 1:1). The slides were then washed in blocking buffer and incubated for 1 h at 37 °C with appropriate Alexa Fluor-labelled secondary antibodies (Invitrogen, A21442, A31571, A21441, A21468, A21203, A11017, 1:300). Finally, the slides were washed and mounted in ProLong Gold antifade reagent (Molecular Probes).
For telomere FISH staining, Telomere PNA FISH kit/cy3 (Dako, K5326) was used on 16 dpp testis spreads following the protocol described by the manufacturer.
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2

Immunofluorescence Analysis of DNA Damage

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The primary antibodies used were: for total p53, p53 DO-1, Santa Cruz sc-126 (Dallas, TX, USA) and FL-393 Santa Cruz; p53 (S15 phosphorylation, Cell Signaling 9286S, Boston, MA, USA); p-Histone H2A.X (S139) (Cell Signaling 2577S); RPA32 (4E4 Cell Signaling 2208S); BrdU (BD Pharmingen 555627, BD Biosciences, San Jose, CA, USA); cleaved Caspase 3 (Asp 173, Cell Signaling 9661S); Cyclin E (Abcam ab3927, Cambridge, UK); PCNA (Abcam ab18197); MCM4 (Abcam ab4459); MCM5 (Abcam ab17967); Orc1 (Abcam ab 85830); Cdt1 (Abcam ab70829); Geminin (Abcam ab12147); β-Actin (Sigma A1978); pRb Ser 807/811 (Cell Signaling 9308S); p21 (2946 Cell Signaling); Cyclin D1 (2926 Cell Signaling); cdc45 (Santa Cruz sc-20685); Chk1 (Santa Cruz sc-8408); Chk1 pS345 (Cell signalling 2341) H3K9-3Me (Millipore 17–625, Billerica, MA, USA).
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