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Trizol reagent

Manufactured by InvivoGen
Sourced in United States, China

TRIzol reagent is an all-in-one solution for the isolation of total RNA, DNA, and proteins from a variety of biological samples. It is a monophasic solution of phenol, guanidine isothiocyanate, and other proprietary components that facilitate the separation of RNA, DNA, and proteins during sample processing.

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8 protocols using trizol reagent

1

RNA Extraction and qPCR Analysis

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The total RNA was extracted from HEK293T (ATCC CRL -11268™) and BMDM cells using Trizol reagent (InvivoGen, 15596018) according to the manufacturer’s instructions. The first strand of cDNA was synthesized from 1 μg of total RNA using random primers and MMLV reverse transcriptase (Invitrogen, 28025-021). Real-time quantitative polymerase chain reaction analyses were performed using the CFX96 Real-Time PCR System (Bio-Rad). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control for normalization, and the relative expression level of the analyzed gene was calculated by the ΔΔCt method. Each sample was measured in duplicates. The primer sequences are as follows: mGAPDH: sense, 5′-CAGAACATCATCCCTGCATC-3′; antisense, 5′-TACTTGGCAGGTTTCTCCAG-3′; mTNF: sense, 5′-CCAGTGTGGGAAGCTGTCTT-3′; antisense, 5′-AAGCAAAAGAGGAGGCAACA-3′.
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2

Breast Cancer HOTAIR Expression Analysis

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Paired breast cancer tissues and adjacent normal tissues resected surgically used for qRT-PCR were collected from 10 breast cancer patients during operation at Changhai Hospital (Shanghai, China). Then the samples were kept in −80°C, and were used for RNA extraction as well as real-time PCR analysis. For tissues and cells, after extraction of RNA with TRIZOL reagent (Invivogen, U.S.A.), cDNA was synthesized with a first strand cDNA synthesis kit (Takara, Dalian, China) according to the manufacturer’s instructions. And the expression of lncRNA HOTAIR was measured by using a SYBR real-time PCR kit (Takara, Dalian, China). The primers were used from previous study [22 (link)] listed as follows: GAPDH, F: GCACCGTCAAGGCTGAGAAC, R ATGGTGGTGAAGACGCCAGT; HOTAIR, F: GGTAGAAAAAGCAACCACGAAGC, R: ACATAAACCTCTGTCTGTGAGTGCC.
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3

Extracting and Quantifying Muscle RNA

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Total RNA was extracted from muscle tissue using TRIzol reagent (InvivoGen, Shanghai, China). The tissue was transfered into lysing matrix tubes (MP Biomedicals) containing 1 mL TRIzol reagent. The tubes were then ground for 30 s using a tissue-crushing apparatus MP FastPrep-24 (MP Biomedicals). Total RNA was extracted as per the manufacturer's protocol. The RNA integrity was assessed by electrophoresis on a 1% agarose gel containing formaldehyde. The RNA concentration was measured using a Beckman DU-640 spectrophotometer (Beckman). The total RNA samples were purified and subjected to reverse transcription using the Takara PrimeScript RT Reagent Kit with gDNA Eraser (Takara, Dalian, China) and processed for cDNA synthesis as per Takara PrimeScript RT instructions (Zhang et al., 2013 (link)).
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4

Quantification of VDR and PPARγ Expression in Adipose Tissue

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The total RNA of adipose tissue was extracted using the Trizol Reagent (InvivoGen, San Diego, CA, USA). After identifying the RNA integrity by electrophoresis, complementary DNA (cDNA) was synthesized by reverse transcription of 2 μg of total RNA. The primer reaction system: 10× PCR 2.5 μL, MgCl2 (25 mmol/L) 2.5 μL, deoxy-ribonucleoside triphosphate (10 mmol/L), 0.5 μL, Taq polymerase (5 U/μL) 0.25 μL, VDR (PPARγ) forward primer (F) (100 μmol/L) 0.04 μL, VDR (PPARγ) reverse primer (R) (100 μmol/L) 0.04 μL, VDR (PPARγ) probe (P) (100 μmol/L) 0.04 μL; glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (F) (100 μmol/L) 0.04 μL, GAPDH (R) (100 μmol/L) 0.04 μL, GAPDH (P) (100 μmol/L) 0.04 μL, sterilized double distilled water supplement 17.01 μL, cDNA 2 μL, a total reaction volume of 25 μL. The amplification conditions of the PCR instrument (Roche 480II) were: pre-denaturation at 95°C for 3 min; 95°C for 5 s, 60°C for 15 s (temperature conversion rate is 20°C/s), and amplification rounds of 40 cycles at 40°C for 1 min per cycle. The fluorescence signals were acquired during the period of 60°C extension. The results were expressed as the ratio of the relative expression of the gene of interest to the expression of the internal reference gene GAPDH. Primer probe sequences in reaction system of real-time PCR are shown in Table 1.
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5

Chicken Ovarian Follicle RNA Expression

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Total RNA was extracted from chicken ovarian follicles that were also used for proteome analysis using TRIzol reagent (InvivoGen, CA, USA). Synthesis of the cDNA was performed using a PrimeScript RT reagent kit with 1 μg of the RNA pretreated with gDNA Eraser (TaKaRa, Dalian, China) according to the manufacturer’s protocol. Real-time quantitative PCR of the mRNA expression level of VLDLR, VLDLR1, WIF1, NGFR, AMH, BMP15, GDF6 and MMP13 was performed using a SYBR Premix Ex Taq™ II kit (TaKaRa, Dalian, China) with primers listed in Table S5 on a Light Cycler 480 real-time PCR system (Roche, Basel, Switzerland) as follows: 95 °C for 30 s, followed by 40 cycles of denaturation at 95 °C for 10 s and annealing and extension at 58 °C for 20 s. The melting curves were obtained, and quantitative analysis of the data was performed using the 2−ΔΔCT relative quantification method [46 (link)]. Quantification was performed by standardizing the reaction results versus those of β-actin.
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6

Quantitative RNA Expression Analysis

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For extracting total RNA TRIzol reagent was used (Invivogen, USA). The isolated RNA was submitted for reverse transcription using RT Reverse Transcription Kit (ThermoFisher USA). The cDNA was submitted for qRT-PCR using ABI Prism 7000 sequence detecting system (Biocompare, USA) with the help of SYBR® Green qPCR supermix (Bio-Rad, USA).The fold changes in the expression were evaluated by comparative threshold cycle (Ct) method. GAPDH and U6 were used as controls for mRNA and miR respectively.
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7

Quantitative mRNA Expression Analysis

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Total RNA was extracted from ovaries and uterine tissue using Trizol reagent (Invivogen, Shanghai, China) following the manufacturer's protocol (13 (link)). Relative mRNA expression levels (Table 1) were determined using the Takara PrimeScriptTM RT reagent kit with gDNA Eraser (Takara, Dalian, China), and the cDNAs were run on a Bio-Rad CFX-96 thermocycler (Bio-Rad, CA, USA). The primers used and the product size are shown in Table 1. The relative expression levels were calculated by the 2−ΔΔCT method and the cytoskeletal protein, β- actin, was included as endogenous control to normalize the data.
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8

Quantitative Analysis of Ovarian Gene Expression

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Total RNA was extracted from the S and F ovarian follicles that were used for proteome analysis using TRIzol reagent (InvivoGen, CA, USA). Synthesis of the cDNA was performed using 1 μg of the RNA by using a PrimeScript RT reagent kit with gDNA Eraser (TaKaRa, Dalian, China) according to the manufacturer's protocol. Real-time quantitative PCR was performed using a SYBR Premix Ex Taq TM II kit (TaKaRa, Dalian, China) on a Light Cycler 480 real-time PCR system (Roche, Basel, Switzerland) as follows: 95°C for 30 s, followed by 40 cycles of denaturation at 95°C for 10 s and annealing and extension at 58°C for 20 s. The melting curves were obtained, and quantitative analysis of the data was performed using the 2 -ΔΔCT relative quanti cation method [44] . The mRNAs of VLDLR, VLDLR1, WIF1, NGFR, AMH, BMP15, GDF6 and MMP13 were quantitatively analyzed by this method. Quanti cation was performed by standardizing the reaction results versus those of β-actin. All primers are listed in Table S5.
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