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22 protocols using bca protein assay kit

1

Western Blot Analysis of SOX10 Protein

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Cell protein lysates were prepared using RIPA buffer (Solarbio, Beijing, China) followed by the addition of protease inhibitor cocktail (Promega) and PMSF (Solarbio), according to the manufacturers’ instructions. The protein concentration was measured using the BCA Protein Assay kit (Generay). Proteins were separated by 10% SDS-PAGE and then transferred to PVDF membranes (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The membranes were incubated with 5% non-fat milk (Becton-Dickinson and Company, Suzhou, China) for 2 h at room temperature and incubated overnight at 4°C with rabbit-anti-human SOX10 (molecular weight: 60 kDa) (1:2,000; cat. no. DF8009; Affinity, Cincinnati, OH, USA) and rabbit-anti-human GAPDH (molecular weight: 37 kDa) (1:5,000; cat. no. 10494-1-AP; Protein Tech Group, Inc., Chicago, IL, USA) antibodies. Subsequently, the membranes were incubated at room temperature with IgG (H+L) HRP (1:10,000; cat. no. RS0002; Ruiying Bio, Suzhou, China) for 1 h. Proteins were visualized with an enhanced ECL reagent (Vazyme, Nanjing, China) by ChemiDoc™ XRS+ (Bio-Rad Laboratories, Inc.).
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2

Western Blot Assay for Protein Analysis

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Western blot (WB) assay was conducted as follows: we added RIPA lysis buffer with PMSF (Solarbio, China) and protease inhibitor cocktail (Promega, USA), to either TU177 or AMC-HN-8 cells before protein was extracted. Protein concentration was detected by the BCA Protein Assay Kit (Generay, China). Protein lysates were heated at 95 °C for 5 min with SDS-PAGE loading buffer (Solarbio, China). Then 20ug protein was separated by SDS-PAGE. According to the molecular weight of the antibodies, the SDS-PAGE were cut prior to hybridization with antibodies. Next the SDS-PAGE which had been cut were transferred onto PVDF membranes (Bio-Rad, USA). 5% skim milk (BD, USA) was used for blocking membranes at room temperature for 2 h. Primary antibodies were added to the blots then incubated at 4 °C overnight. Then the blots were incubated with secondary antibodies at room temperature for 2 h. ChemiDocTM XRS + (Bio-Rad, USA) and enhanced chemiluminescence (ECL) detection reagents (vazyme, China) were used to detect the band. The information of primary antibodies was listed in the Supplementary Table S3.
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3

Quantitative Protein Analysis of PRAME Overexpression

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By lysing the cells AMC-HN-8 and TU177 transfected with the overexpression of PRAME or the PcDNA3.1 empty vector, RIPA lysis buffer (Solarbio, China) was adopted for protein extraction, supplemented with PMSF (Solarbio, China) as well as with a protease inhibitor cocktail (Promega, USA). The above step was followed by ultrasonication (Thermo FB120, USA) for higher acquisition efficiency. The protein concentration was examined using the BCA Protein Assay Kit (Generay, China). Protein lysates were then mixed with SDS-PAGE loading buffer (Solarbio, China) and boiled at 95°C for 5 min. Equal amounts of protein (20 µg) were employed for electrophoresis on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and probed with the following primary antibodies. The signals were visualized with enhanced chemiluminescence (vazyme, China) using ChemiDoc™ XRS + (Bio-Rad, USA). All primary antibodies used are listed in Table 3.
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4

Lung Tissue Lysis and Immunoblotting

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The intervention of lung tissue on ice for 10 min with lysate containing 10 mM PMSF for full lysis. The protein concentration of tissue lysates was determined using the BCA Protein Assay Kit (Generay, Shanghai, China). Each lane contains 30 μg of protein and is separated by standard immunoblotting according to standard protocols. Primary antibodies against JAK2 (1:1000), STAT3 (1:1000), pSTAT3 (1:1000) and horseradish peroxidase (HRP)-conjugated secondary antibodies were derived from Cell Signaling Technology, Inc (Boston, USA). Blots were visualized by ECL with GAPDH as the loading control. Western blots were quantified by the FluorChem E system.
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5

Quantifying Apoptosis-Related Proteins

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Cells infected with lenti-RBM5 were seeded into six-well plates, and total protein was extracted after 72 h with CelLytic™ MEM Protein Extraction Kit (Sigma-Aldrich, USA) followed by quantified with bicinchoninic acid assay (BCA Protein Assay Kit, Generay, Shanghai, China). Then, 5 μg total protein were separated on SDS-polyacrylamide gel, transferred to nitrocellulose membranes, and incubated overnight with primary antibodies against Bcl-2, Bax, β-catenin, cyclin D1 (Santa Cruz Biotechnology, USA) and TCF, DKK1, GAPDH, Caspase-3, TNF-α (Abcam, USA) at 4 °C. After that, membranes were washed and incubated in horseradish peroxidase-conjugated secondary antibody for about 1 h at room temperature and target protein were determined with ECL kit (Pierce, USA).
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6

Immunoblotting in Cell Biology

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For immunoblotting, cells treated with different compounds were collected at the indicated time and lysed with the RIPA lysis buffer (Beyotime, China). Quantification of the cell lysates were assayed with a BCA protein assay kit (Generay, China). 20 μg proteins were subjected to electrophoresis using 12% SDS-PAGE gels and transferred onto polyacrylamide difluoride (PVDF) membranes (Millipore, United States). After being blocked with 5% bovine serum albumin (BSA) in Tris-buffered saline with Tween-20, membranes were incubated with individual primary antibodies (1:1000) at 4°C overnight followed by secondary antibody (1:5000) at room temperature for 1 h. The blots were detected by ECL Western blotting Detection System (Millipore, United States). The band density was measured by LabWorks Image Acquisition and Analysis Software (UVP, Upland, CA, United States) and normalized with band density of β-actin or GAPDH.
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7

Protein Extraction and Western Blot Analysis of Arthrodial Cartilage

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Arthrodial cartilage was used for protein extraction. After arthrodial cartilage collection, the arthrodial cartilage of rats was crushed using a mortar and pestle in liquid nitrogen and then lysed with RIPA buffer in the presence of 1% protease inhibitor cocktail (Roche, Basel, Switzerland). Protein from cell cultures was also extracted using RIPA buffer. The supernatant was collected after centrifugation at 12,000 g and 4°C for 30 min. Protein concentration was quantified with the BCA Protein Assay Kit (Generay, Shanghai, China). After being denatured in boiling for 5 min in SDS sample buffer, 40 μg of total protein was separated by 6%-15% SDS-PAGE, blotted onto PVDF membranes, and then probed with the following antibodies (Cell Signaling Technology, Danvers, MA, USA): monoclonal anti-TLR4 antibody, monoclonal anti-NF-κB p65 antibody, monoclonal anti-NF-κB phosphorylated p-65 (P-p65) antibody, and mouse anti-β-action antibody, conjugated to horseradish peroxidase, which were used as secondary antibodies. Protein bands were visualized by incubation with BeyoECL Plus (P0018, Beyotime, China) for 1 min and imaged by a Gel Image System (Tanon, 5200, China). Densitometry was performed by using the enhanced chemiluminescence (ECL) detection system (Thermo Scientific, Rockford, IL, USA).
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8

Quantitative Protein Analysis of Autophagy and Apoptosis in Huh7 Cells

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Total protein from cultured Huh7 cells was extracted on ice using RIPA Lysis Buffer (Beyotime) supplemented with a protease and phosphatase inhibitor cocktail (Roche, Basel, Switzerland). Protein concentration was determined using a BCA Protein Assay kit (Generay, Shanghai, China), and proteins were separated using sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE), then transferred onto PVDF membranes (Millipore). The membranes were incubated with primary antibodies against LC3, P62 (1:1000, Cell Signaling Technology, MA, USA), ATG14, Caspase-3, PARP, C-PARP, or β-actin (1:1000, Proteintech Group, Chicago, IL, USA), then blocked with 5% fat-free milk powder in TBST buffer at 4°C overnight. The membranes were incubated with secondary antibody (CWBIO; 1:5000 dilution) and bands were detected by enhanced chemiluminescence (Thermo Fisher Scientific) using an Automatic Chemiluminescence Imaging Analysis System (Tanon-4200; Tanon Science & Technology, Shanghai, China).
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9

Western Blot Analysis of Brain Proteins

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Total proteins from brain tissues or cultured cells were lysed in RIPA buffer (Cell Signaling Technology, MA, USA) with 1 mM phenylmethanesulfonyl fluoride (PMSF) and protease inhibitor (MCE, NJ, USA). BCA protein assay kit (Generay Biotechnology, Shanghai, China) was used to quantified protein concentrations. Equal amount of protein was applied for SDS-PAGE electrophoresis and then transferred to PVDF membranes (Millipore, MA, USA). Membranes were blocked with 5% skim milk at room temperature for 1 h, then incubated with primary antibodies C3 (1:1000, Abcam), iNOS (1:1000, Abcam), S100A10 (1:1000, Abcam), Arg1 (1:1000, Cell Signaling Technology), suppressor of cytokine signaling 1 (SOCS1) (1:1000, Abcam) and β-actin (1:5000, Cell Signaling Technology) overnight at 4 °C. HRP-conjugated secondary antibodies were used for further incubation with the membranes for 120 min, and signals on blots were developed by the ECL reagents (Millipore, MA, USA) and were analyzed by ImageJ software.
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10

Western Blot Protein Extraction and Analysis

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Total protein was extracted using RIPA lysis buffer with PMSF (Beyotime). After the concentration of protein was detected using a BCA protein Assay Kit (Generay, Shanghai, China), the same amount of protein (30 μg/lane) was subjected to SDS-PAGE and transferred to PVDF membranes. Membranes were blocked with non-fat milk for 2 h at room temperature and were incubated with the primary antibodies at 4°C overnight. On the next day, membranes were incubated with secondary antibody solution (goat anti-mouse IgG). Chemiluminescent signals were detected using an ECL plus kit (Thermo Fisher Scientific), and were quantified with Image J software.
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