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3 protocols using ab70774

1

Chromatin Immunoprecipitation Validation Protocol

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ChIP assays were performed with H1299 cells in accordance with
standard protocols43 (link). Normal rabbit IgG served as the control. ChIP samples were
analyzed by quantitative real-time PCR using the FastStart Universal SYBR Green
Master (Roche). A standard curve was prepared for each set of primers using serial
titration of the input DNA. The percentage of ChIP DNA was calculated relative to
the input DNA from primer-specific standard curves using the Rotor-Gene 6000
Series Software 1.7. The primer sequences for ChIP are listed in Supplementary
Table 4. Antibodies used were: H4S1ph
(Abcam; ab14723), H4K5ac (Millipore; CS204381), H4R3me2a (Active Motif; 39705),
H4R3me2s (Abcam; ab5823), CK2α (Abcam; ab70774), H3K4me3 (Abcam; ab8580), and
H3K27me3 (Abcam; ab6002).
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2

Antibody Detection in Cell Cultures

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Antibodies used in the experiments were obtained from the following companies: rabbit monoclonal anti‐CK2β antibody (1:1000) (ABGENT; AJ1128b); mouse monoclonal anti‐β‐ACTIN antibody (1:1000) (Easybio Technology; BE0021); mouse monoclonal anti‐MVH antibody (1:200) (Abcam; ab27591); mouse monoclonal anti‐CK2α antibody (1:1000) (Abcam; ab70774); and rabbit polyclonal anti‐CK2α′ antibody (1:1000) (Bioworld Technology; BS6571); secondary antibodies were purchased from Zhongshan Golden Bridge Biotechnology Co, LTD.
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3

Antibody Usage in Protein Analysis

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The following antibodies were used for immunoblotting and immunoprecipitation: polyclonal anti-ZC3H4 antibody, developed against a purified GST-tagged human ZC3H4 fragment (amino acid residues 1114–1315) in this study; polyclonal anti-WDR82 antibody (kindly provided by the Roeder laboratory); anti-CK2α (10992-1-AP, Proteintech); anti-CK2β (ab76025, Abcam); anti-SPT5 (A300-869A for immunoblotting; A300-868A for immunoprecipitation, Bethyl Laboratories); anti-RNAPII (ab26721, Abcam); anti-S5p RNAPII (ab5131, Abcam); anti-S2p RNAPII (ab5095, Abcam); anti-β-actin (TA811000, Origene); anti-phospho-CK2 substrate [(pS/pT)DXE] (8738, Cell Signaling Technology) and anti-FLAG (A8592, Sigma-Aldrich). The following antibodies were used for ChIP-seq analyses: anti-ZC3H4 (this study) and anti-WDR82 (48 (link)), generated in house; anti-CK2α (ab70774, Abcam); anti-SPT5 (sc-133217, Santa Cruz); anti-RNAPII (A300-653A, Bethyl Laboratories); anti-S5p RNAPII (ab5131, Abcam); anti-Sp2 RNAPII (A300-654A, Bethyl Laboratories); anti-H3K4me3 (C15410003, Diagenode); anti-H3K27me3 (9733, Cell Signaling Technology) and anti-H3K36me3 (61101, Active Motif).
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