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14 protocols using ab189860

1

Western Blot Analysis of Osteogenic Markers

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Protein samples were resolved by 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis for 2 h and electrophoretically transmitted to a PVDF membrane (Merck Millipore, USA). After blocking nonspecific binding sites with 5% skim milk for 60 min at room temperature, the membranes were incubated overnight at 4°C with primary antibodies against SIRT3 (1 : 1000; ab189860), Bax (1 : 1000; ab32503), Bcl-2 (1 : 1000; ab59348), ALP (1 : 1000; ab95462), Osterix (1 : 500; ab22552), OCN (1 : 500; ab93876), β-actin (1 : 1000; ab8227), SOD2 (1 : 5000; ab13533), and Ac-SOD2 (1 : 5000; ab137037) (all from Abcam, Cambridge, UK). Then, the membranes were rinsed in Tris-buffered saline with Tween 20 and incubated with the corresponding secondary horseradish peroxidase-conjugated antibodies (1 : 1000) for 2 h at room temperature. The proteins were detected using chemiluminescent HRP substrates (Millipore Corporation, Billerica, MA, USA).
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2

Exosome Protein Profiling via Western Blot

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Total proteins from the exosomes or cells were extracted and detected using the bicinchoninic acid kit. Briefly, 40 µg of total protein was separated using sodium dodecyl-sulfate polyacrylamide gel electrophoresis (120 V, 90 min) and transferred to polyvinylidene fluoride (PVDF) membranes (90 V, 90 min). For blocking, 5% non-fat milk was added to the PVDF membranes for 1 h. Anti-CD9 (1: 1,000, ab307085, Abcam, Cambridge, MA, USA), anti-CD63 (1: 1,000, ab217345, ab68418), anti-CD81 (1: 1,000, ab109201), anti-SIRT3 (1: 500, ab189860), anti-AMPK (1: 1,000, ab207442), anti-p-AMPK (1: 1,000, ab133448), anti-LC3II/I (1: 1,000, ab48394), anti-P62 (1: 1,000, ab240635), anti-NLRP3 (1: 1,000, ab263899), anti-apoptosis-associated speck-like protein containing a CARD domain (ASC) (1: 1,000, ab70627), anti-IL-1β (1: 1,000, ab283822), anti-iNOS (1:1,000, ab178945), anti-IL-6 (1: 1,000, ab233706), anti-TNF-α (1:1,000, ab183218), anti-Calnexin (1:1000, ab22595) and anti-GAPDH (1:1,000, ab8245) were added and incubated overnight at 4 °C. Moreover, the horseradish peroxidase-labeled goat-anti-rabbit secondary antibody (1:5,000 diluted) was incubated at 25 ℃ for 2 h. Protein blots were detected using Pierce™ ECL (Thermo Fisher, Waltham, USA) in ChemiDoc MP (Bio-Rad, California, USA).
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3

Western Blot Analysis of Protein Expression

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Protein expression was examined by Western blot as previously described [34 (link)]. HPMECs or lung tissues were lysed using RIPA buffer, and protein concentration was examined using the Pierce BCA protein assay kit (23227, Thermo Fisher Scientific, USA). The polyvinylidene difluoride (PVDF) membranes were purchased from GE Healthcare (10600023, USA). The following primary antibodies were employed: VE-cadherin (1 : 1000, ab33168, Abcam, USA), β-catenin (1 : 1000, 610154, BD Transduction Laboratories, USA), dephosphorylated active β-catenin (05-665, Millipore, Germany), Sirt3 (1 : 500, ab189860, Abcam, USA), matrix metallopeptidase-7 (MMP-7, 1 : 400, ab5706; Abcam, USA), and cyclooxygenase-2 (COX-2, 1 : 1000, ab62331, Abcam, USA). α-Tubulin was purchased from the Proteintech Company (Hubei, China). The secondary antibodies of goat antirabbit (1 : 5000, ab6721; Abcam, USA) or goat antimouse (1 : 5000, A21010; Abbkine, USA) were used. PVDF membranes were visualized using a chemiluminescence Western blotting detection reagent. The signal intensity of each immunoblot was analyzed using ImageJ software (version 1.48v; NIH, USA), and each band density was normalized by the α-tubulin protein expression level. To clearly present the results, the value of protein expression in the sham-operated or control group was further normalized to 1 using the mean.
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4

Mitophagy Regulation in Rat DRG

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We used the Opal multi‐label immunofluorescence staining technique. Five‐micrometer formalin‐fixed paraffin‐embedded (FFPE) DRG sections of the rat model were stained. All experiments were detected by immunohistochemistry using a rabbit polyclonal antibody against SIRT3 (ab189860; Abcam), a monoclonal rabbit antibody against FoxO3a (2497#; Cell Signaling Technology), a rabbit polyclonal antibody against PINK1 (23274‐1‐AP; Proteintech), a rabbit polyclonal antibody against Parkin (2132#; Cell Signaling Technology), a rabbit polyclonal antibody COX IV (11242‐1‐AP; Proteintech), a rabbit polyclonal antibody against LC3B (ab48394; Abcam), and a rabbit polyclonal antibody against NeuN (26975‐1‐AP; Proteintech). Whole slide scans were performed using the ×20 objective lens. Acquired images were analyzed by inForm tissue finder software (Akoya bioscience). For the mitophagy immunofluorescence, visualization of fluorescence signal was performed by confocal microscopy at excitation wavelengths of 488 nm (green), 543 nm (red), and 405 nm (blue), and we initially measured under a 64× magnification, selected neurons with a diameter less than 40 μm, and counted the colocalization points.
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5

Histological and Immunohistochemical Analysis of Femur Samples

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All of the left femurs (n = 15 per group) were preserved at 4°C for histology and immunohistochemical analyses after μCT. Part of the left femur (n = 5 per group) was used for undecalcificated bone slicing, and slabs with a thickness of 1 mm were accomplished. Portions from 1 mm proximal to the tangent line of the femur growth plate were used for surveying of histomorphometry by light and fluorescence microscopy. The rest of the left femurs (n = 10 per group) were used for paraffin sections. The implant was carefully removed, and femur sections (with thickness of 5 μm) were made for hematoxylin and eosin (H&E) staining to compare histological structures. Dynamic measurements involved single- and double-labeled perimeters, interlabel width, and bone mineral apposition rate (MAR), and static measurements included Tb.N and BV/TV. To identify the difference in the expression of osteogenetic markers, oxidative stress-related markers, and pathway-related markers in the abovementioned three groups, antibodies against the following were used for immunostaining: alkaline phosphatase (ALP, ab95462), osterix (ab22552), osteocalcin (OCN) (ab93876), NAPDH oxidase 2 (NOX2; ab80508), cytochrome c (cyto-c) (ab133504), sirtuin 3 (SIRT3; ab189860), and superoxide dismutase 2 (SOD2, ab13533) (all from Abcam, Cambridge, UK).
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6

Protein Extraction and Western Blot Analysis of HT22 Cells

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Total protein was extracted from cultured HT22 cells using protein lysis buffer (Beyotime Biotech, China). The protein concentration was determined with a BCA kit (P0010S, Beyotime Biotech). The proteins in each sample were separated by 10% SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. Western blot analysis was carried out using the following primary antibodies raised against target proteins: rabbit anti-SIRT3 (dilution 1:1000, ab189860, Abcam), rabbit anti-SOD2 (dilution 1:1000, ab68155, Abcam), rabbit anti-acetyl-SOD2 (dilution 1:1000, AF3751, Affinity Biosciences, Melbourne, Victoria, Australia), rabbit anti-cleaved caspase 3 (dilution 1:1000, 19677-1-AP, Proteintech, Fisher Scientific), and rabbit anti-β-actin (dilution 1:1000, ab181602, Abcam) antibodies overnight at 4 °C. The following secondary horseradish peroxidase (HRP)-conjugated antibodies were used at 1:5000 dilution: goat anti-rabbit HRP (Millipore, Watford, UK). Blots were visualized with enhanced chemiluminescence detection reagents using a Chemidoc TM Touch Imaging System (Bio-Rad, Hercules, CA).
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7

Protein Expression Analysis by Western Blot

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The cell homogenates were loaded into 10% SDS-polyacrylamide gels and subjected to electrophoresis. The separated proteins were transferred to nitrocellulose membranes and then incubated with bovine albumine serum solution for 1 hour, followed by overnight incubation at 4°C with the following antibodies: mouse monoclonal β-actin antibody (diluted 1:5000; AC5441 –Sigma Aldrich, St. Louis, MO, USA), goat polyclonal CAT antibody (CAT; diluted 1:1000; sc34285—Santa Cruz Biotechnology Inc., Dallas, TX, USA), rabbit polyclonal PGC-1α (dilution 1:2500; ab191838—Abcam, Cambridge, UK); rabbit polyclonal SOD2 (diluted 1:2000; ab13534—Abcam, Cambridge, UK), or with rabbit polyclonal SIRT3 (diluted 1:1500; ab189860—Abcam, Cambridge, UK). Protein detection was carried out using secondary infrared fluorescent dye conjugated antibodies absorbing at 800 nm or 700 nm. The blots were visualized using an Odyssey Infrared Imaging Scanner (Li-Cor Inc., Lincoln, USA).
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8

Hippocampal Protein Expression Analysis

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Total protein was extracted from hippocampal tissues with protein lysis buffer (Beyotime Biotech, China). The protein concentration was determined with a BCA kit (P0010S, Beyotime Biotech). The proteins in each sample were separated by 10% SDS–polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. Western blot analysis was carried out using the following primary antibodies raised against target proteins: rabbit anti-acetyl lysine (dilution 1:1000, ab190479, Abcam, Cambridge, UK), rabbit anti-Sirt3 (dilution 1:1000, ab189860, Abcam), rabbit anti-SOD2 (dilution 1:1000, ab68155, Abcam), rabbit anti-acetyl-SOD2 (dilution 1:1000, AF3751, Affinity Biosciences, China), and rabbit anti-β-actin (dilution 1:1000, ab181602, Abcam) antibodies overnight at 4 °C. The following secondary horseradish peroxidase (HRP)-conjugated antibodies were used at 1:5000 dilution: goat anti-rabbit HRP (12–348, Millipore, Watford, UK) and goat anti-mouse HRP (sc-2005, Santa Cruz Biotechnology, Dallas, TX, UK). Blots were visualized with enhanced chemiluminescence detection reagents using a Chemidoc TM Touch Imaging System (Bio-Rad, Hercules, CA, USA).
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9

Protein Expression Analysis with Western Blot

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Western blot was performed according to the manufacturer's specifications. The primary antibodies used were MVH (ab27591, Abcam, USA), OCT4 (ab18976, Abcam, USA), TNF-α (EPR22598-212, Proteintech, USA), IL-2 (26,156–1-AP, Proteintech, USA), IL-10 (Abcam, ab189392), TGF-β(ab179695, Abcam, USA). SIRT1(ab12193, Abcam, USA), SIRT3 (ab189860, Abcam, USA), p21(28,248–1-AP, Proteintech, USA), p53 (10,442–1-AP, Proteintech, USA), GAPDH (ab181602, Abcam, USA). All the HRP secondary antibodies were obtained from Affinity Biosciences. After accordingly antibody incubation and washing with TBST, PVDF membranes were imaged using an EasySee Western blot kit (DW101–01, TransGen, China). Images AI600 and Image J were used to scan and analyze the images.
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10

Western Blot Analysis of Cellular Proteins

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Cells were lysed with RIPA buffer (Thermo Scientific, Belmont, MA, USA) at 4 °C for 30 minutes. The extracted proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes by electroblotting. Membranes were blocked with nonfat milk at 4 °C overnight, followed by incubation with the following primary antibodies at 4 °C overnight: anti-SIRT3 (1:800, ab189860, Abcam, Cambridge, MA, USA), anti-CypD (1:800, ab231155), anti-proliferating cell nuclear antigen (PCNA; 1:1,000, ab92552), anti-CyclinD1 (1:800, ab156448), anti-CDK4 (1:1,000, ab199728), anti-P21 (1:1,000, ab215971), anti-caspase-3 (1:800, ab184787), anti-Bax (1:1,000, ab182733), anti-Bcl-2 (1:1,000, ab196495), and anti-β-actin (1:800, ab8226). The membranes were then incubated 1.5 hours at 25 °C with the secondary antibody (1:2,000, ab216773, Abcam, China). β-actin was used as the internal reference. Target bands of proteins were visualized with an ECL western blotting kit (Millipore, Boston, MA, USA). The relative expressions of proteins was assessed using the 2−∆∆CT method.
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