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4 protocols using ab109446

1

Western Blot Analysis of Protein Expression

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After extracting protein using RIPA buffer (Beyotime, Shanghai, China), the protein was quantified using BCA Protein Assay Kit (Tiangen, Beijing, China). Then, the protein samples were separated by 10% SDS-PAGE and transferred to PVDF membranes (Beyotime). Following blocking with 5% skimmed milk for 2 h at room temperature, the membranes interacted with primary antibodies against proliferating cell nuclear antigen (PCNA; 1:1000, ab18197, Abcam), Bcl-2 associated X protein (Bax; 1:1000, ab104156, Abcam), HDAC9 (1:20000, ab109446, Abcam), or GAPDH (1:2500, ab9485, Abcam) overnight at 4°C. After washing, the membranes were probed with HRP-coupled secondary antibody (1:25000, ab205718, Abcam) at room temperature for 2 h. Finally, the signal intensity was measured using ECL reagent (Absin, Shanghai, China).
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2

Western Blot Analysis of HDAC9 and VEGFA

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Cells and tissues were treated with radioimmunoprecipitation assay lysis buffer (Abcam) to extract total protein and treated with bicinchoninic acid (Beyotime) to quantify protein concentration. After 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis-dependent separation, protein samples were transferred to polyvinylidene fluoride membranes (Bio-Rad, China) and blocked with 5% bovine serum albumin. After these steps, the membranes were treated with primary antibodies diluted with blocking buffer in a shaker at 4 C overnight. The next day, the primary antibodies were washed away with Tris-Buffered Saline Tween (TBST), followed by incubation of the membranes with specific secondary antibodies in a shaker for 2 h. After another wash with TBST, signaling was detected with the enhanced chemiluminescence kit, using NIH Image J software (version 1.52a; National Institutes of Health, Bethesda, MD, USA) to analyze gray-scale values. The antibodies used in this assay were as follows: HDAC9 (1:10000, ab109446, Abcam), VEGFA (1:450, ab183100, Abcam), GAPDH (1:2500, ab9485, Abcam), and secondary antibody (1:2000, ab205718, Abcam).
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3

Western Blot Analysis of HDAC9

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Whole cell extracts were prepared in lysis buffer (20 mM Tris, pH 7.4, 137 mM NaCl, 10% glycerol, 1% Triton X-100, 2 mM EDTA, 1 mM PMSF, 10 mM NaF, 5 mg/mL aprotinin, 20 mM leupeptin, and 1 mM sodium orthovanadate) and centrifuged at 12,000 rpm for 15 min. Protein extracts were subjected to SDS-PAGE. The primary antibodies used were anti-HDAC9 (ab109446, Abcam, Cambridge, UK) and anti-GAPDH (60004, Proteintech, Wuhan, China).
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4

Immunohistochemical Analysis of PD-L1, HDAC9, and HDAC2

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Paraffin embedded tissue samples were cut into 5 µm sections. Immunohistochemical staining were performed following the routine protocol. The primary antibodies were the following: anti-PD-L1 (ab205921, Abcam, Cambridge, UK), anti-HDAC9 (ab109446, Abcam, Cambridge, UK) and anti-HDAC2 (ab32117, Abcam, Cambridge, UK). The density of IHC staining was quantified by Image-Pro Plus v6.2 software (Media Cybernetics Inc., Bethesda, MD).
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