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3 protocols using mouse anti actin ab3280

1

CRISPR Targeting of ATP2C1 Gene

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Guide RNAs against ATP2C1 were designed and ordered as a single-stranded oligonucleotide from IDT (5′-GGAGCTGTCACCTTAGAACA-3′); the scrambled control guide (Scr; 5′-GGTCTCTGTACGGGCCGCCC-3′) does not align with the human genome by primer blast. Following phosphorylation and annealing, guides were ligated into BsmBI-digested LentiCrisprV2 (a gift from the Feng Zhang lab; Addgene plasmid number 52961). Mouse anti-actin (ab3280) was obtained from Abcam (Cambridge, MA), while goat-anti-mouse horseradish peroxidase (HRP) (32430) was obtained from Thermo Fisher. Rabbit anti-lamin B1 (12586) was obtained from Cell Signaling Technology (Danvers, MA). Hybridoma AAV antibodies A1, A69, and B1 were purchased from American Research Products, Inc. (Waltham, MA). Fluo4-am (no. F14201) was purchased from Thermo Fisher. Ionomycin (2092) and BAPTA-AM (2787) were obtained from Tocris Bioscience (Minneapolis, MN). Bortezomib (S1013) was obtained from Selleck Chemicals (Houston, TX).
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2

Immunoblotting and Immunofluorescence Protocol

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Mouse anti-actin (ab3280) and mouse anti-KIAA0319L(AAVR) (ab105385) were obtained from Abcam (Cambridge, MA). Goat anti-rabbit-HRP (111-035-003) was obtained from Jackon ImmunoResearch (West Grove, PA). Anti-Ubiquitin antibody P4D1 (sc-8017) was purchased from Santa Cruz Biotechnology (Dallas, TX). Rabbit anti-RNF121 (PA5-61136), Goat anti-Biotin (31852), and Goat anti-mouse-HRP (32430) were obtained from ThermoFisher. Anti-capsid protein antibody B1 [54 (link)] was used to blot for capsid protein, while anti-capsid antibody A20 [55 (link)] was used for immunofluorescence. MG132 (10012628) was purchased from Cayman Chemical (Ann Arbor, MI). PYR-41 (N2915), DBeQ (SML0031), as well as ATM/ATR (118501) and DNAPK (260960) inhibitors were purchased from Sigma-Aldrich. PladB was a kind gift from the lab of Yasuhiro Ikeda (Mayo Clinic, Rochester, Minnesota).
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3

Preparation and Analysis of Cell Lysates

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Preparation of lysates and immunoblot analyses were performed as described previously (5 (link)) using Tris lysis buffer (50 mM Tris–HCl pH 7.8, 150 mM NaCl, 1% IGEPAL CA-630) containing 20 mM NaF, 20 mM β-glycerophosphate, 0.3 mM Na-vanadate, 20 μg/ml RNase A, 20 μg/ml DNase and 1/300 protease inhibitor cocktail (P8340, Sigma–Aldrich) and phosphatase inhibitor cocktail #2 (P5726, Sigma–Aldrich). Antibodies used in this study were purchased from the following sources: rabbit anti-Cdk2 (M2 SC-163, Santa Cruz Biotechnology), mouse anti-actin (ab-3280, Abcam, Cambridge, MA, USA), rabbit anti-GFP (ab-290, Abcam), mouse anti-tubulin (Developmental Studies Hybridoma Bank, University of Iowa), mouse anti-Cyclin A (SC-751, Santa Cruz Biotechnology) and mouse anti-cyclin E (SC-198, Santa Cruz Biotechnology). Secondary antibodies used for western blot analysis were goat anti-mouse (31430) and, goat anti-rabbit (31460, Thermo Scientific). mouse anti-tubulin hybridoma cell line (clone #12G10) was developed by J. Frankel and E.M. Nelson under the auspices of the NICHD and maintained by the Developmental Studies Hybridoma Bank.
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