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7 protocols using gapdh ab2302

1

Characterization of Alzheimer's Pathology

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The following antibodies were used: monoclonal anti-Aβ antibodies (mouse 4G8; Covance, Munich, Germany), monoclonal anti-neuronal nuclei antibody NeuN (mouse; Chemicon, Temecula, CA, USA), monoclonal anti-actin antibody (mouse; Calbiochem; Darmstadt, Germany), monoclonal anti-APP antibody (22C11; Millipore GmbH Schwalbach/Ts., Germany), monoclonal anti-synaptophysin antibody (mouse; Millipore), PSD-95 (7E3-1B8; mouse; Thermo Fisher Scientific, Rockford, IL, USA), monoclonal anti-Arc antibody (C-7; mouse; Santa Cruz Biotechnology, Dallas, TX, USA) and GAPDH (#AB2302; chicken; Millipore). The following anti-Tau antibodies were used: monoclonal phosphorylation independent Tau-5 (mouse; Labvision, Westinghouse, CA, USA), monoclonal AT8 (mouse; Thermo Fisher Scientific, Rockford, IL, USA), polyclonal pS199 (rabbit; Invitrogen, Carlsbad, CA, USA), and monoclonal PHF1 (mouse; a generous gift from Peter Davies, Albert Einstein College of Medicine, Bronx, NY, USA). As secondary antibodies, cyanine 3 (Cy3)-coupled anti-mouse (Dianova, Hamburg, Germany) and peroxidase-conjugated anti-mouse and anti-rabbit antibodies (Jackson Immuno Research, West Grove, PA, USA) were employed.
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2

Quantifying Metabolic Enzyme Profiles

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Whole cells/spheroids or mitochondrial lysates were prepared in RIPA buffer and quantified using the BCA Protein Assay (Thermo Scientific). Proteins were separated on 4–20% SDS-PAGE gels, transferred to PVDF membranes, and probed with antibodies against IDH1 (ab94571), IDH2 (ab55271), IDH3 (ab58641) from Abcam, PDHα (#459400, Theromo), PDHα-pSer293 (AP1062), GAPDH (AB2302) from Millipore, PDK1 (#3820), Hif1α(#3716) from Cell Signaling, CTP (sc-86392), AIF (sc-13116) from Santa Cruz Biotechnology and Actin (A3853, Sigma).
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3

Synthesis and Evaluation of HDAC6/Tubulin Inhibitor MPT0B451

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MPT0B451, a dual HDAC6 and tubulin inhibitor was synthesized by Dr. Jing-Ping Liou (School of Pharmacy, College of Pharmacy, Taipei Medical University, Taiwan). Vincristine, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and propidium iodide (PI) were purchased from Sigma Chemical Co. (St. Louis, MO, United States). Primary antibodies against Caspase 8 (06-775), MPM2 (pSer/pThr) (05-368) and GAPDH (AB2302) were purchased from Millipore (Bedford, MA, United States). The antibodies against Acetyl-Histone H3 (Lys9) (#9649), Histone H3 (#9715), Acetyl-α-tubulin (#3971), α-tubulin (#2144), Cyclin B1(#4135), Aurora A (#14475), Aurora A (Thr288) (#3079), PLK1 (#4535), PLK1 (Thr210) (#9062), cleaved caspase-3 (#9664), PARP (#9542), and caspase 9 (#9508) were purchased from Cell Signaling Technology (Beverly, MA, United States). The antibodies against Cdc2 (SC-54) and cdc25c (SC-372) as well as the labeled secondary antibodies goat anti-rabbit IgG-HRP (SC-2004) and goat anti-mouse IgG-HRP (SC-2005) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, United States).
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4

Quantifying Metabolic Enzyme Profiles

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Whole cells/spheroids or mitochondrial lysates were prepared in RIPA buffer and quantified using the BCA Protein Assay (Thermo Scientific). Proteins were separated on 4–20% SDS-PAGE gels, transferred to PVDF membranes, and probed with antibodies against IDH1 (ab94571), IDH2 (ab55271), IDH3 (ab58641) from Abcam, PDHα (#459400, Theromo), PDHα-pSer293 (AP1062), GAPDH (AB2302) from Millipore, PDK1 (#3820), Hif1α(#3716) from Cell Signaling, CTP (sc-86392), AIF (sc-13116) from Santa Cruz Biotechnology and Actin (A3853, Sigma).
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5

Antibody Catalog for Cell Signaling

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The HA antibody (12CA5) has been described.40 (link) The following antibodies were purchased. Cell Signaling (Leiden, The Netherlands): phosphoThr202/Tyr204-ERK (9101), Santa Cruz Biotechnology (Heidelberg, Germany): BRAF (C19), cyclin B1 for immunoblot (GNS1), FOXM1 for immunoprecipitation, immunoblot and immunofluorescence in vitro (MPP2; C-20 and H-92), control immunoglobulin G, R&D systems (Minneapolis, MN, USA): Pin1 (MAB2294), Sigma-Aldrich: Pin1 (WH0005300M1, St Louis, MO, USA), FLAG-M2 (F1804), Tubulin (T5168), Abcam: CENPF (Ab-5, Cambridge, UK) and FOXM1 for immunofluorescence in tissue (ab175798), Chemicon: GAPDH (AB2302, Merck Millipore, Billerica, MA, USA), Pierce: cyclin B1 for immunofluorescence (MA5-13128, Thermo Fisher Scientific, Waltham, MA, USA).
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6

Antibody Catalog for Cell Signaling

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The HA antibody (12CA5) has been described.40 (link) The following antibodies were purchased. Cell Signaling (Leiden, The Netherlands): phosphoThr202/Tyr204-ERK (9101), Santa Cruz Biotechnology (Heidelberg, Germany): BRAF (C19), cyclin B1 for immunoblot (GNS1), FOXM1 for immunoprecipitation, immunoblot and immunofluorescence in vitro (MPP2; C-20 and H-92), control immunoglobulin G, R&D systems (Minneapolis, MN, USA): Pin1 (MAB2294), Sigma-Aldrich: Pin1 (WH0005300M1, St Louis, MO, USA), FLAG-M2 (F1804), Tubulin (T5168), Abcam: CENPF (Ab-5, Cambridge, UK) and FOXM1 for immunofluorescence in tissue (ab175798), Chemicon: GAPDH (AB2302, Merck Millipore, Billerica, MA, USA), Pierce: cyclin B1 for immunofluorescence (MA5-13128, Thermo Fisher Scientific, Waltham, MA, USA).
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7

Multiparameter Western Blot Analysis

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Membranes were blotted with p-EGFRY1173 (Invitrogen, 44–794G), EGFR (SC-03), ERK2 (SC-154), p-PKCαS657 (SC-12356) (Santa Cruz Biotechnology), p-AKTS473 (9271S), AKT (4691S), p-ERKT202/Y204 (4370S), p-RPS6S235/236 (4858S), RPS6 (2217S), p-4EBP1T37/46 (2855S), 4EBP1 (9644S), p-PKC (pan) (βII Ser660) (9371S), PKCα (59754S), p-MARCKSS152/156 (2741S), MARCKS (5607S), p-STAT3Y705 (9145S), STAT3 (4904S), PARP (9532S), and JAK2 (3230S) (Cell Signaling), 4G10 (05–321), and GAPDH (AB2302) (EMD Millipore). Bound antibodies were detected with HRP-linked anti-mouse (DC-02L) or anti-rabbit IgG (DC-03L) (Calbiochem), followed by ECL (Amersham, RPN2106).
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