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6 protocols using ifn γ

1

Evaluating Macrophage Effects on Parasite Survival

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To determine whether addition of macrophages to the culture system enhanced parasite survival further, a monocyte-derived cell line, THP-1 (ECACC), originally derived from an acute monocytic leukaemia patient were evaluated. To differentiate THP1 cells into macrophages (Mϕ), cells were treated with 10 ng/ml of 12-O-tetradecanoylphorbol-I3-acetate (PMA; Peprotech), as previously described [22 (link)]. For polarisation into either a classically- or alternatively-activated phenotype, cells were treated with 50ng/ml recombinant interferon-gamma, (IFN-γ), or 25 ng/ml of recombinant interleukin 4 (IL-4) and interleukin 13 (IL-13), respectively (Peprotech), as previously detailed [23 (link)]. Forty-eight hours post-stimulation, Mϕ(IFN-γ), Mϕ(IL-4/IL-13), or non-polarised Mϕ(naïve) cells were washed 3 times in fresh medium and 0.4 μm pore-size transwell inserts (Corning) were added to fresh monolayers of LECs in a 6-well plate. Six millilitres of EGM-2 MV medium was then added, ready for the addition of parasites, as detailed above. Lymphatic endothelial cell monolayers with additional LEC trans-well inserts were included as controls.
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2

Immortalized Mouse Podocyte Culture Protocol

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The immortalized mouse podocytes were developed by Prof. Dr. Karlhans Endlich, University of Heidelberg, Germany and kindly provided by Prof. Dr. Niels Olsen Saraiva Camara, Institute of Biomedical Sciences, University of Sao Paulo. As previously described42 (link), the cell culture was grown in 75-cm2 flasks (Corning, New York, NY, USA) coated with type I collagen and maintained in RPMI-1640 medium (Thermo Fisher Scientific INC, St Peters, MO, USA) supplemented with 10% fetal bovine serum (FBS, Thermo Fisher Scientific), 30 IU/mL IFN-γ (Cell Sciences, Newburyport, MA, USA), 100 IU/mL penicillin, 100 μg/mL streptomycin and 2 mmol/L L-glutamine (pH 7.4 ) at 33 °C in a 5% CO2 atmosphere. The culture medium was changed every two days until 85% confluence. Cells at passages 8 to 10 were detached by incubation with 5 mL trypsin-EDTA solution (Thermo Fisher Scientific, 0.05%) for 5 min at 37 °C. The cells were seeded for differentiation at specific cell densities into cell culture dishes with a diameter of 100 mm × 20 mm (Corning) in the same conditions, except for the absence of IFN-γ. The cells were differentiated for 10–15 days. Podocyte differentiation was confirmed by the identification of podocin and synaptopodin on protein expression. Phalloidin staining was used to identify the podocyte cytoskeleton.
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3

Differentiation of Immortalized Mouse Podocytes

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Conditionally immortalized mouse podocyte cell lines were kindly provided by Dr. Danesh (Baylor College of Medicine, USA) and Dr. Wei Shi (Division of Nephrology, Guangdong General Hospital, Guangdong Academy of Medical Sciences, China) and were cultured as described previously. Cells were cultured at 33°C in RPMI-1640 medium (Corning, USA) supplemented with 10% fetal bovine serum (FBS) (Gibco, USA), 1 U/ml recombinant interferon-γ (IFN-γ) (ProSpec, Israel), and penicillin and streptomycin (Hyclone, USA). After four to five days, at confluence, podocytes were reseeded and incubated at 37°C in culture dishes coated with 12 μg/ml type-I collagen (Corning, USA) in RPMI-1640 medium supplemented with 10% FBS and deprived of IFN-γ, for 8 to 14 days to allow differentiation.
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4

Cytokine Exposure Effects on Apoptosis

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Human recombinant TNF-α, IL-1-β and IFN-γ were obtained from PeproTech, Inc. (Rocky Hill, NJ). Exposures of cytokines individually and in combination was as follows: 100 ng/mL TNF-α, 50 ng/ml IL-1-β and 200 ng/ml of IFN-γ were prepared in culture medium and applied to apical and basal-lateral sides of the cell layer for 48 h. Medium was filter sterilized with 0.2 µM disc filter units (Corning, Inc.). For antibody microarray analyses of pro-apoptotic factors produced by the Gie-3B11 cells, treatment with cytokines was only for 2.5 hours.
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5

Screening FDA Drugs for PD-L1 Modulation

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U937 cells (2 × 105) were preincubated with 100 μg/L IFNγ for 48 h and plated in 96-well plates per well (Corning). Then 10 μM FDA-approved drugs or drug candidates were added and incubated for 12 h. All compounds were commercially purchased. Treatments were performed twice; each plate contained a negative control (dimethyl sulfoxide) and a positive control (Ruxolitinib). U937 cells were centrifuged for 5 min at 1000 × g and the supernatant discarded. The collected cells were washed with phosphate-buffered saline (PBS) twice and incubated with PE anti-human CD274 at 4 °C for 30 min. Then the incubated U937 cells were washed and resuspended with PBS, and the protein level of membrane PD-L1 reflected by PD-L1-PE median fluorescence intensity (MFI) was determined using flow cytometry analysis. The hit compounds were picked and classified according to the PD-L1-PE-MFI and the targeted pathways.
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6

Transcriptional Response of BMDM to IFNγ and Novel Compound

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BMDM from three C57BL/6 mice were differentiated as described above and plated in 10% L929-conditioned DMEM medium on day 6 post-differentiation in 6-well Corning Costar flat bottom cell culture plates at a density of 3x106 cells/well and treated with 10 ng/mL of IFNγ. BMDM from three individual mice were plated and treated separately to represent three replica experiments. Next day, BMDM were treated with vehicle (DMSO, 0.1% final concentration), or 2062 at 10 μM for 1, 2, and 6 h in the presence of 10 ng/mL IFNγ (Roche). Cells were washed once with warm PBS and processed for RNA isolation with the Qiagen RNA-easy kit. Quality control of RNA libraries was performed using the BioAnalyzer 2100. Single-end sequencing with 40–50 million reads was performed at the Weill Cornell Genomics Core Facility on Illumina Hi-Seq platform. The RNA-seq data were analyzed by Weill Cornell Genomics Core Facility using DE-seq algorithm. Genes differentially expressed (~2 fold) at FDR 10% and p<0.05 were clustered for further analysis.
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