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Zen blue microscope software

Manufactured by Zeiss

ZEN Blue is a comprehensive microscope software solution from Zeiss. It offers a range of tools for image acquisition, processing, and analysis. The software provides an intuitive interface for controlling Zeiss microscopes and managing experimental data.

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2 protocols using zen blue microscope software

1

Inflammasome Activation Visualization and Inhibition

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THP-1 cells were seeded into 96-well plates at a concentration of 40,000 cells per 100 μL complete media. To visualize the role of RTD on inflammasome activation, cells were seeded onto 12 mm glass coverslips (Neuvitro Corporation, Vancouver, WA, USA) in a 24-well plate at a concentration of 2 × 105 cells in 0.5 mL complete medium for confocal imaging. Cells were differentiated in the wells for 48 h in 100 nM PMA. The complete medium was aspirated and replaced with RPMI +1% HI-FBS before addition of LPS (100 ng/mL), RTD-1 (7.14 μg/mL), or azithromycin (50 μg/mL) for 6 h. ATP (5 mM; Millipore Sigma) was added 45 min before cells were labeled using the FAM-FLICA® Caspase-1 Assay Kit (ImmunoChemistry Technologies, Bloomington, MN, USA) according to the manufacturer’s instructions. Inflammasome activity was measured using a Synergy H1 kinetic fluorescent microplate reader. Cells seeded onto the coverslips were fixed and mounted using a Fluoroshield Mounting Medium (Abcam, Cambridge, UK). Representative confocal images were taken using a ZEISS LSM 880 with Airyscan (ZEISS, Oberkochen, Germany). The images were analyzed using ZEN Blue Microscope software (ZEISS). Lastly, RTD-1′s direct effect on caspase-1 inhibition was assessed in vitro using a fluorogenic substrate assay according to the manufacturer’s instructions (Abcam) using a Synergy H1 kinetic fluorescent microplate reader.
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2

Quantifying SARS-CoV-2 Receptor Expression in GBM

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GBM cells were seeded and stained with Anti-ACE2 (Abcam, Cat# ab15348), Anti-TMPRSS2 (Millipore MABF2158-100UG), and Anti-NRP1 (Proteintech 60067–1-Ig) antibodies. To study the distribution of ACE2, TMPRSS2, and NRP-1, we used Quantitative Confocal Microscopy (QCM) with high resolution parameters combined with stereology [30 (link)–33 (link)]. Acquisition parameters were established relative to a negative control. We used 2.5D pixel intensity analysis to determine the relative expression of SARS-Cov2 in each neural or GBM stem cells utilizing the Zeiss ZEN Blue Microscope Software.
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