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11 protocols using carbopac ma 1 column

1

Quantitative Carbohydrate Analysis in Beans

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The concentrations of simple carbohydrates (fructose, galactose, glucose, mannose, and sucrose) and sugar alcohols (arabitol, erythritol, glycerol, mannitol, myo-inositol, sorbitol, and xylitol) in the processing waters and aqueous bean extracts were determined by high-performance anion exchange chromatography with pulsed amperometric detection (HPAEC-PAD), using an ICS 3000 chromatograph equipped with a CarboPac PA-100 and CarboPac MA-1 column (Dionex, Sunnyvale, CA, United States), respectively, as described previously (Zhang et al., 2019 (link)). Quantification was performed via internal standardization in triplicate. The internal standard (IS) solution consisted of rhamnose (20 mg/L; Merck, Darmstadt, Germany) in acetonitrile (Merck). All samples were mixed with the IS solution, microcentrifuged (19,400 × g for 15 min at 10°C), and filtered [Chromafil 0.20 μm polytetrafluoroethylene (PTFE; in the case of simple carbohydrates) filters or polyethersulfone filters (in the case of sugar alcohols); Macherey-Nagel, Düren, Germany] before injection (10 μL) into the column.
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2

Quantitative Polyol Analysis in M. megachiliensis

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The amount of intracellular polyol was determined as previously described (Kobayashi et al. 2013 (link)). Briefly, cell suspensions of M. megachiliensis were immersed in boiling water for 10 min, mixed with 100% (w/v) trichloroacetic acid, and vigorously stirred with a vortex mixer for 20 min at room temperature. After centrifugation at 13,400×g for 10 min, polyol in the supernatant was amperometrically assayed using a 4 mm × 250 mm CarboPac MA-1 column with an ICS-3000 chromatographic system (Dionex, Osaka, Japan) at flow rate of 0.3 mL of 500 mM NaOH as solvent per minutes. For dry cell weight determinations, cell suspensions (1 mL each) were dried by incubating for 5 h in a drying oven maintained at 80 °C. The polyol and dry cell weight examination were performed in triplicate independently.
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3

Characterizing Xylanase Halotolerance and Activity

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The effects of different salt concentrations, 0–4 M NaCl, on xylanase activity was evaluated at pH 7 and 40 °C. The halotolerance of the enzyme was evaluated by incubating the enzyme at 20 °C in the presence of 0–4 M NaCl for 24 h, and then measuring its residual activity at 40 °C.
In analysis of hydrolysis, the purified XynT was incubated with beechwood xylan or birchwood xylan at 40 °C in McIlvaine buffer (pH 7) for 2 h or 8 h. Thereafter, the enzyme was removed using a PierceTM protein concentrator (PES 5K MWCO; ThermoFisher). A high-performance anion-exchange chromatography (HPAEC, ICS-3000 system) equipped with a CarboPac MA1 column (Dionex, CA, USA) was used to analyzed the enzyme, and 0.1 M NaOH and 0.2 M NaAc were used as the solvents.
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4

HPLC-PAD Quantification of WSCs

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WSCs were separated and quantified from plant extracts and enzyme assays by HPLC-PAD as previously described (Bachmann et al., 1994 (link); Peters et al., 2007 (link); Peters and Keller, 2009 (link)). Briefly, The BC-100 HPLC system comprised a Ca2+/Na+ moderated ion partitioning carbohydrate column (Benson BC-100 column, 7.8 × 300 mm; Benson Polymeric, Reno, Nevada, USA) operated at 90°C and isocratically eluted with 0.005% (w/v) Ca/Na2-EDTA at a flow rate of 0.6 ml min−1. To confirm the identities of certain carbohydrates, samples were also analyzed by anion exchange chromatography using a CarboPac MA1 column (4 × 250 mm; Dionex, Sunnyvale, CA, USA) operated at 30°C and isocratically eluted with 0.6 N NaOH at a flow rate of 0.4 ml min−1. WSCs on both systems were quantified in silico, using the Chromeleon v. 6.4 software package, against a series of 5 nmol of standard sugars. The quantity of standard sugars used corresponds to the linear response range of the both chromatographic systems.
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5

Determination of Mannitol in V. volvacea

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For the determination of mannitol content, mycelia were freeze-dried and ground into powder by a TissueLyser (Qiagen, Hilden, Germany). The method for determining mannitol levels in V. volvacea mycelia by high-performance anion chromatography-pulsed amperometric detection (HAPEC-PAD) has already been described [20 , 21 (link)].
The samples (0.1 g) were ultrasonically extracted in 10 mL of ultrapure water for 30 min and centrifuged at 3600 × g for 20 min at temperature of less than 25°C. Then, the supernatant was filtered with a 0.45-μm filter (Millipore, Bedford, MA, USA) and diluted 5 times for analysis by an ICS2500 HPAEC-PAD system comprising a GP50 quaternary gradient pump, an EG50 automatic eluent generator, an LC30 column oven, a Dionex CarboPac MA1 column, and an ED50 electrochemical detector (Dionex, Sunnyvale, CA, USA). The temperature of the column was 30°C, the mobile phase was 480 mM NaOH solution, and the flow rate was 6.67 μL s−1. The adopted external standard mixture included mannitol (Sigma, USA). Each standard was dissolved in deionized water and diluted to several standard solutions to generate a calibration curve [22 (link)].
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6

Monosaccharide and Sulfate Analysis of Polysaccharides

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Monosaccharide contents were obtained by the hydrolysis of the polysaccharides in 2 M H2SO4 at 110 °C for 60 min, followed by neutralisation with 1 M NaOH; the monosaccharides were quantified by high-performance anion-exchange chromatography (HPAEC-PAD) [20 ], using the Shimadzu Prominence HPLC system (Shimadzu, Japan), equipped with an Antec II Decade electrochemical detector (ANTEC Leyden, The Netherlands). The analysis was carried out on a Dionex CarboPac MA-1 column, thermostated at 35 °C. Elution was performed using 450 mM NaOH at a flow rate of 0.4 ml min−1, and the sample injection size was 10 μl.
The sulphate content was quantified using the BaCl2-gelatin turbidity method [21 (link)] after hydrolysing the samples in 1 M HCl at 115 °C for 5 h.
The pH of 1% (w/v) polysaccharide sols was determined using a Mettler Toledo SevenEasy pH meter.
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7

HPLC-based Glucose and Organic Acid Analysis

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The concentration of glucose was determined using a HPLC system (BioLC; Dionex, CA, USA) coupled to an electrochemical detector (ED40; Dionex, CA, USA) and CarboPac MA-1 column [25] . A 600 mM NaOH solution was used as the eluent. Organic acids were measured by high-pressure liquid chromatography over an organic acid column (Aminex HPX-87H; Bio-Rad) at 60 o C with 0.1 N sulfuric acid as the eluent and a flow rate of 0.6 ml/min. The peaks were detected by determining the UV A 210 .
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8

Quantification of Carbohydrates and Sugar Alcohols

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The concentrations of simple carbohydrates (i.e., fructose, glucose, and sucrose) and sugar alcohols (i.e., glycerol and mannitol) were quantified in the aqueous extracts in triplicate by high-performance anion exchange chromatography with pulsed amperometric detection (HPAEC-PAD), using ICS 3000 chromatograph systems equipped with a CarboPac PA-20 and CarboPac MA-1 column, respectively (Thermo Fisher Scientific), as described previously (De Bruyn et al., 2017 ). Quantification was performed by external calibration, including an internal standard [IS; solution of 0.02 g of rhamnose (Merck) per liter of acetonitrile (Thermo Fisher Scientific)].
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9

HPLC Analysis of Xylose and Glucose

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Xylose and glucose present in the S. cerevisiae culture supernatants were quantified by high-pressure liquid chromatography (HPLC) analysis. The samples were centrifuged at maximum speed in a benchtop centrifuge for 10 min and analyzed on a Dionex ICS-5000+ instrument (Thermo Scientific), equipped with a CarboPac MA1 column. Separation was performed by isocratic elution with 480 mM NaOH, at a flow rate of 0.4 mL min−1 for 35 min.
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10

Quantifying Carbohydrate Profiles in Grafted Trees

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After extension growth had ceased (250 DABB), final architectural measurements were made of six ‘RG’/‘M9’ and six ‘RG’/‘RG’ grafted trees. A segment of stem tissue was collected from 20 cm above the graft junction (scion), 5 cm below the graft junction (rootstock stem) and roots. Tissue was snap-frozen in liquid nitrogen, dried in a freeze-dryer, and then ground to a fine powder. A 0.05 g subsample was extracted with 80% ethanol with Adonitol added as the internal standard and then incubated for 1 h at 60 °C. Extracted samples were centrifuged and the supernatant decanted off. The residue was re-suspended in 80% ethanol re-spun and supernatants combined. The insoluble residue was transferred into Erlenmeyer flasks and analysed for starch as per Smith et al.46 A subsample of the supernatant was taken and dried using a centrifugal concentrator; samples were then re-dissolved in ultrapure water. The sugars were analysed using DIONEX ICS-5000 Reagent-Free IC (RFIC; Thermo Fisher Scientific, Waltham, MA, USA) system with a CarboPac MA1 column with electrochemical detection.
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