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Guanidine hydrochloride gdnhcl

Manufactured by Merck Group
Sourced in United States, Germany

Guanidine hydrochloride (GdnHCl) is a chemical compound commonly used in laboratory settings. It functions as a chaotropic agent, which means it can disrupt the non-covalent interactions in proteins and other biomolecules, causing them to unfold or denature. GdnHCl is often used in biochemistry and molecular biology to study protein structure and stability.

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7 protocols using guanidine hydrochloride gdnhcl

1

Quantitative Proteomic Sample Preparation

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, and HPLC grade acetonitrile and Solvents A (0.1% formic acid) and B (0.1% formic acid in acetonitrile) for liquid chromatography-mass spectrometry (LC-MS) were from Sigma–Aldrich (St. Louis MO, USA). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were from Merck (Darmstadt, Germany). Trypsin Gold (MS grade) was purchased from Promega (Madison WI, USA). The Pierce Quantitative Colorimetric Peptide Assay and SOLAμ™ Solid Phase Extraction (SPE) HRP (horse radish peroxidase) 2mg/1 ml 96-well plates were from Thermo Fisher Scientific (Rockford IL, USA), and Nanosep® 30K Omega Centrifugal Devices were from Pall Life Sciences (Ann Arbor MI, USA).
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2

Protein Identification and Quantification

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, HPLC grade acetonitrile and A (0.1% formic acid in water) and B (0.1% formic acid in acetonitrile) solutions for LC-MS were purchased from Sigma-Aldrich (St. Louis, USA). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were purchased from Merck (Darmstadt, Germany). Trypsin gold MS grade was purchased from Promega (Madison, WI). The water used in this study was purified using a MilliQ apparatus (Millipore, Billerica, MA).
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3

Quantitative Proteomic Sample Preparation

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, and high-performance liquid chromatography (HPLC) grade acetonitrile and Solvents A (0.1% formic acid in water) and B (0.1% formic acid in acetonitrile) for LC-MS were purchased from Sigma-Aldrich (St. Louis). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were purchased from Merck (Darmstadt, Germany). Trypsin Gold (MS grade) was purchased from Promega (Madison, WI). The water used in this study was purified using a MilliQ apparatus (Millipore, Billerica, MA). The Pierce Quantitative Colorimetric Peptide Assay was purchased from Thermo Fisher Scientific (Rockford) and Nanosep 30K Omega Centrifugal Devices were purchased from Pall Life Sciences (Ann Arbor). Reversed-phase C18 columns were purchased from Nest Group (Southborough, MA).
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4

Optimized Protein Expression in E. coli

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The ECOS™ BL21 (DE3) competent Cells were purchased from Yeasterm Biotech Co., Ltd. (Taipei, Taiwan). Lysogeny broth (LB) was purchased from Cyrusbioscience (New Taipei City, Taiwan). Isopropyl β-D-1-thiogalactopyranoside (IPTG), Triton X-100, guanidine hydrochloride (GdnHCl), trifluoroacetic acid, D2O, 2,2-dimethyl-2-siapentane-5-sulfonate (DSS), and ampicillin were purchased from Sigma-Aldrich (St. Louis, MO, USA). 15N-labeled ammonium chloride was purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA, USA). Phenylmethylsulfonyl fluoride (PMSF) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Coomassie Brilliant Blue G-250 was purchased from J.T. Baker Chemical Co. (Phillipsburg, NJ, USA). Sodium azide was purchased from Merck (Millipore, Burlington, MA, USA).
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5

Engineered Antimicrobial Peptide Expression

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The bacterial strains and vectors used in this work are listed in Table 1. L. lactis was used for expression of the modified peptides and cultured in M17 broth supplemented with 0.5% (w/v) glucose (GM17) or GM17 agar for genetic manipulation or in minimal expression medium (MEM) (Rink et al., 2005 (link)) for protein expression at 30°C.
Chloramphenicol and/or erythromycin were used at 5 μg/mL when appropriate.
The plasmids pNZnisA-E3 (Kuipers et al., 2004 (link)) and pNZnisA leader6H were used for the expression of nisin and as a template for the construction of the designed hybrid peptides. Plasmids pIL3BTC (Rink et al., 2005 (link)) and pIL3EryBTC (van Heel et al., 2013 (link)) encoding the nisin modification machinery were used to produce and modify the fusion peptides.
Commercial vasopressin [(Arg8)-Vasopressin acetate salt] was ordered from Sigma-Aldrich as a control. Endoproteinase Glu-C from Staphylococcus aureus V8 (V8), cyanogen bromide (CNBr), hydroxylamine (NH2OH), 3-Bromo-3-methyl-2-(2-nitrophenylthio)-3H-indole (BNPS-Skatole), and trypsin were ordered from Sigma-Aldrich as cleavage reagents. Ammonium acetate (CH3COONH4), formic acid, guanidine hydrochloride (Gdn-HCl), and lactic acid were ordered from Sigma-Aldrich. All the chemical reagents are of analytic purity.
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6

Purification of Monomeric Kusabira Orange

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Guanidine hydrochloride (GdnHCl) was purchased from Sigma-Aldrich (MO, USA). All other reagents and solvents were A grade commercial samples. All solutions were made with MilliQ water. Monomeric Kusabira Orange was expressed and purified as previously described [21] (link).
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7

Tau Protein Immunodetection Protocol

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Proteinase K (PK) and guanidine hydrochloride (GdnHCl) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Reagents for enhanced chemiluminescence (ECL Plus) were from Amersham Pharmacia Biotech, Inc. (Piscataway, NJ). Anti-tau mouse monoclonal antibodies RD3 and RD4 (Sigma-Aldrich) against human tau repeating region and sheep anti-mouse (SVM) IgG conjugated with horseradish peroxidase as a secondary antibody (AC111P, CHEMICON International, Inc, Burlington, MD) were used. Antibodies against Phospho-Tau (Thr231) and phospho-Tau (Ser396) were purchased from Cell Signaling Technology (Danvers, MA).
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