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5 protocols using mouse anti iκb

1

Chondrocyte Protein Isolation and Analysis

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Total protein was isolated from primary cultured chondrocytes using RIPA lysis buffer (150 mM NaCl, 1% NP-40, 50 mM Tris pH 8.0, 0.2% sodium dodecyl sulfate, and 5 mM NaF) containing a protease and phosphatase inhibitor cocktail (Roche, Madison, WI, USA). MMP3 and MMP13 were isolated from chondrocyte culture-conditioned medium using trichloroacetic acid, as previously described [33 (link)]. The protein extracts were then separated by SDS-PAGE and transferred onto a PVDF membrane by western blotting. The following antibodies were used for western blotting: anti-MMP3 (ab52915; Abcam, Cambridge, UK); mouse anti-MMP13 (ab51072; Abcam); mouse anti-Erk1/2 (610408; Becton Dickinson, Bergen County, NJ, USA); mouse anti-IκB (9242; Cell Signaling Technology (CST),Danvers MA, US); mouse anti-p65 (#6956; CST); mouse anti-pp65 (#13346; CST); mouse anti-p38 (#9212; CST); mouse anti-pp38 (#9215S; CST); mouse anti-c-Jun N-terminal kinase (JNK) (#9252S; CST); mouse anti-pJNK (#9251S; CST), and mouse anti-pErk (#9101S; CST). The protein bands were subsequently detected on the blotted membranes using a secondary antibody and the SuperSignal West Dura kit (Thermo Scientific, Waltham, MA, USA). Erk1/2 was used as a house-keeping protein during the subsequent analysis.
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2

Chondrocyte Protein Extraction and Analysis

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Whole protein was extracted from the primary cultured chondrocytes using RIPA lysis buffer containing 150 mM NaCl, 1% NP-40, 50 mM Tris/HCl (pH 8.0), 0.2% SDS, and 5 mM NaF with addition of protease and phosphatase inhibitor mixture (Roche, Madison, WI, USA). Total proteins were separated by SDS-PAGE, and Western blotting analysis was performed. The following antibodies were used: Goat anti-COX-2 (sc-1745; Santa Cruz, Dallas, TX, USA); mouse anti-ERK1/2 (610408; Becton Dickinson, NJ, USA); mouse anti-IκB (9242; Cell Signaling Technology, Danvers, MA, USA); mouse anti-p65 (8242; CST; mouse anti-phospho-p65 (3033; CST mouse anti-p38 (#9212; CST), mouse anti-pp38 (#9215S; CST); mouse anti-c-Jun N-terminal kinase (JNK) (#9252S; CST); mouse anti-pJNK (#9251S; CST); mouse anti-pErk (#9101S; CST). Each signal was visualized using the SuperSignal West Dura Kit (Thermo Scientific, Waltham, MA, USA). Density analysis (AlphaEase FC 4.0; Alpha Innotech, San Leandro, CA, USA) was used to quantify the relevant band intensities. Extracellular signal-regulated kinase (ERK) was used as the loading control.
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3

Western Blot Analysis of Inflammatory Markers

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Protein was extracted from the 5 samples from each group, electrophoresed with 4-20% sodium dodecyl sulfate (SDS) -polyacrylamide gradient gel, and transferred onto polyvinylidene fluoride transfer membranes (Immobilon-P, 0.45 μm, Millipore, Billerica, MA, USA). The membranes were incubated with primary antibodies: rabbit anti-COX2 (1:200, ab15191, Abcam, Cambridge, MA, USA), mouse anti-GFAP (1:1000, MAB360, Millipore), rabbit anti-iNOS (1:200, ab15353, Abcam), mouse anti-MAP-2 (1:1000, MAB3418, Millipore), rabbit anti-NF-κB p65(1:1000, #8242, Cell Signaling, Danvers, MA, USA), mouse anti-Phospho-NF-κB p65 (1:1000, #3036, Cell Signaling), mouse anti-IκB (1:1000, #9242, Cell Signaling), mouse anti-Phospho-IκB (1:1000, #9246, Cell Signaling), and rabbit anti-TLR-4 (1:200, sc16240, Santa Cruz Biotechnology, Santa Cruz, CA, USA), followed by incubation with peroxidase-conjugated secondary antibodies. The signals were detected by an enhanced chemiluminescence system (E2400, Denville Scientific, South Plainfield, NJ, USA). The same membranes were incubated with antibody for β-actin as a control after washing with stripping buffer (21059, Thermo Scientific, Waltham, MA, USA). The blotting signals were quantified using ImageJ software (NIH) and presented as adjusted density normalised to density of actin in the same gel.
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4

Protein Extraction and Western Blot Analysis

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Total proteins were extracted with lysis buffer (150 mM NaCl, 1% NP‐40, 50 mM Tris, 0.2% sodium dodecyl sulphate and 5 mM NaF) supplemented with a protease inhibitor and phosphatase inhibitor (Roche, Madison, WI, USA) cocktail inhibitor. Mmp3 and Mmp13 were detected after trichloroacetic acid precipitation as described 6. Each protein was visualized using the SuperSignal West Dura kit (Thermo Scientific, Waltham, MA, USA), and total Erk was used as a loading control. Western blot analysis was performed to detect protein levels using the following antibodies: mouse anti‐Mmp3 (ab52915; Abcam, Cambridge, UK), mouse anti‐Mmp13 (ab51072; Abcam), goat anti‐Cox2 (SC‐1745; Santa Cruz Biotechnology, Dallas, TX, USA), mouse anti‐Erk1/2 (610408; Becton Dickinson, New Jersey, New Jersey, NJ, USA USA), mouse anti‐pErk1/2 (#9101; Cell Signaling Technology, Boston, MA, USA), mouse anti‐IκB (9242; Cell Signaling Technology) and anti‐type II collagen (MAB8887; Millipore, Billerica, MA, USA). The relevant band intensities were quantified by densitometric analysis (AlphaEase FC 4.0; Alpha Innotech).
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5

Western Blot Analysis of MMPs

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Total proteins were extracted with lysis buffer (150 mmol/L NaCl, 1% NP‐40, 50 mmol/L Tris, 0.2% sodium dodecyl sulphate and 5 mmol/L NaF) supplemented with a protease inhibitor and phosphatase inhibitor cocktail (Roche, Madison, WI, USA). MMP3 and MMP13 were detected after trichloroacetic acid precipitation as described previously.23 Each protein was visualized using the SuperSignal West Dura kit (Thermo Scientific, Waltham, MA, USA); total extracellular signal‐regulated kinase (ERK) was used as a loading control. Western blot analysis was performed to detect protein levels using the following antibodies: mouse anti‐Hif‐2α (sc‐13596; Santa Cruz Biotechnology, Dallas, TX, USA), mouse anti‐Mmp3 (ab52915; Abcam, Cambridge, UK), mouse anti‐Mmp13 (ab51072; Abcam), goat anti‐COX‐2 (sc‐1745; Santa Cruz), mouse anti‐Erk1/2 (610408; Becton Dickinson, NJ, USA), mouse anti‐pErk1/2 (9101; Cell Signaling Technology, Boston, MA, USA) and mouse anti‐IκB (9242; Cell Signaling Technology). Anti‐Hif‐2α antibody (ab8365; Abcam) was used for immunostaining as previously described.14
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