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Laser confocal microscope

Manufactured by Leica
Sourced in Germany, United States, Japan

The Leica Laser Confocal Microscope is a high-resolution imaging system that uses a focused laser beam to scan a specimen. The microscope captures detailed, three-dimensional images by collecting light from a single focal plane within the specimen, allowing for the examination of fine structural details.

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209 protocols using laser confocal microscope

1

Immunofluorescence Staining and Confocal Microscopy

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Cells cultured on glass coverslips were rinsed in PBS and fixed in 4% paraformaldehyde for 10 minutes. After washing three times in PBS, the cells were permeabilized with 0.2% Triton X-100 for 15 minutes. To block nonspecific binding, the coverslips were incubated with 3% BSA for 30 minutes at room temperature, probed with primary antibodies overnight at −4°C followed by FITC-conjugated secondary antibody for 1 h at room temperature. Finally, cells were counterstained with Hoechst 33,342 (10 μg/mL; Sigma, USA) for 30 min and visualized under a laser confocal microscope (Leica, Germany).
For staining F-actin, cells were washed with PBS and fixed in 3.7% formaldehyde for 10 minutes at room temperature. After permeabilizing with 0.1% Triton X-100 in PBS for 5 minutes, cells were incubated with rhodamine-conjugated phalloidin for 20 minutes at room temperature. The coverslips were washed and nuclei were stained with Hoechst 33,342 for 20 min. Cells were analyzed with a laser confocal microscope (Leica, Germany).
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2

Immunofluorescence Analysis of Activated MAPK Signaling

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The anesthetized rats were transcardially perfused with 0.9% saline. The eyes were excavated and the anterior segments were removed. The eyecups were fixed in 4% PFA for 1 h and dehydrated in graded sucrose solutions (20–30%) overnight at 4°C. The eyecups were then embedded in optimal cutting temperature compound (Tissue-Tek; Ted Pella, Inc., Redding, CA, USA) and snap-frozen at −80°C until they were sectioned (10 μm). The frozen sections were stored in a −20°C freezer. The slices were fixed in 4% PFA for 30 min and washed three times with PBS. They were then treated with 0.5% Triton X-100 (Beyotime, Shanghai, China) for 15 min. The slices were blocked with 10% goat serum in PBS for 1 h at room temperature and then incubated with a primary antibody overnight at 4°C. Antibodies directed against the following proteins were used: p-P38 (1:100, Cat #4511, CST, Boston, MA, USA), p-JNK (1:100, Cat #4668, CST, Boston, MA, USA), or p-ERK1/2 (1:100, Cat #4370, CST, Boston, MA, USA). The slices were then washed three times with PBS, incubated with the corresponding secondary antibody (1:1000, Cat #A21428, Invitrogen, Carlsbad, CA, USA) for 1 h, and counterstained with 4′,6-diamidino-2-phenylindole (diluted 1:1000; Sigma-Aldrich, St. Louis, MO, USA). Finally, the slices were scanned with a laser confocal microscope (Leica Microsystems, Bensheim, Germany).
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3

Fluorescein-labeled GILZ-p Uptake in Müller Cells

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Müller cells were cultured on 6-well plates and starved in serum-free DMEM F12 for 24 h. The cells were then treated with 10 μM fluorescein isothiocyanate (FITC)-labeled GILZ-p for 6 and 12 h, respectively. After treatment, the Müller cells were washed with PBS, fixed in 4% paraformaldehyde (Sigma-Aldrich Corp., St. Louis, MO, United States), and permeabilized in 0.1% Triton X-100 (Promega, Madison, WI, United States) for 10 min. The cells were counterstained with 4′6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich Corp.) and examined under a laser confocal microscope (Leica Microsystems, Wetzlar, Hesse-Darmstadt, Germany).
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Quantifying Proliferation in LNCaP Xenografts

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Xenograft sections derived from LNCaP cell lines were stained with anti-Ki67 antibody overnight at 4°C. They were then incubated with a secondary antibody (Alexa Fluor 488 Conjugate) for signal visualization. Nuclei were stained with DAPI (Beyotime, China). A laser confocal microscope (Leica Microsystems AG) was used to acquire images.
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5

Immunostaining of Inflammatory Markers

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Antibodies for AZGP1 (1:200), TNF-α (1:20), IL-6 (1:200), and NF-κB (1:50) were used. Cell nuclei were stained with 4’6-diamidino-2-phenylindole (DAPI) for IF staining. The secondary antibody used for IF staining was Alexa Fluor 488/594 AffiniPure goat anti-rabbit IgG (H+L) (Santa Cruz Biotechnology, TX, United States). IHC images were obtained using an inverted microscope (Leica Microsystems, Germany), and IF images were obtained using a laser confocal microscope (Leica Microsystems).
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6

Chondrocyte Apoptosis Assay Protocol

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The corresponding subgroups were first pretreated with GW501516 and GSK3787, followed by the addition of IL-1β (10 ng/mL, 24 h). After being treated with paraformaldehyde (4%, 30 min), chondrocytes underwent three PBS washes. Finally, TUNEL staining was performed using (TUNEL Apoptosis Assay Kit, Beyotime). The laser confocal microscope (Leica Microsystems GmbH) was used to take all of the images.
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7

Immunohistochemical Localization of SHP-1, pJNK, and GS

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The eyecups were fixed in 4% paraformaldehyde for 1 hour and dehydrated sequentially in 20% and 30% sucrose solutions at 4°C for 1 hour. After the anterior sections had been removed and the cups filled with optimal cutting temperature compound (Tissue‐Tek; Ted Pella), they were then frozen at −80°C, and cut in the sagittal direction (8‐μm‐ thick sections). After being blocked with 5% goat serum and permeated with 0.15% Triton X‐100 in PBS for 45 minutes, the sections were incubated with the following primary antibodies overnight at 4°C: mouse anti‐SHP‐1(sc‐7289, diluted 1:50; Santa Cruz Biotechnology); mouse anti‐pJNK (9255S, diluted 1:100; Cell Signaling Technology) and rabbit anti‐ glutamate synthase (GS) (ab49873, diluted 1:5000; Abcam). The sections were rinsed three times with PBS and incubated with a secondary antibody (A28180; Invitrogen; or 4414, Cell Signaling Technology) for 1 hour at room temperature. After the sections were rinsed three times, they were counterstained with Fluoroshield with DAPI mounting medium (ab104139; Abcam). The sections were then observed with a laser confocal microscope (Leica Microsystems).The immunofluorescence intensity in the images was measured with ImageJ software (National Institutes of Health).
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8

X-Irradiation-Induced DNA Damage Assay

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Cells were exposed to 6 Gy X-IR and allowed to recover after 48 h of incubation. Cells grown in a μ-slide VI (Ibidi, Martinsreid, Germany) were fixed using 4% paraformaldehyde for 30 min at 4°C and permeabilized with PBS containing 0.2% Triton X-100 for 10 min. Cells were then blocked with 3% BSA and incubated with the rabbit polyclonal antibody to γH2AX (ab2893, 1:100, Abcam, Cambridge, MA, USA). Following washing, the cells were incubated with the Alexa Fluor 488 goat anti-rabbit IgG (#4412S, 1:2,000, Cell Signaling Technology, Danvers, MA, USA) or 1 h at 37°C. The nuclei of cells were subsequently stained with DAPI. Immunofluorescence images were obtained using a laser confocal microscope (Leica Microsystems, Wetzlar, Germany).
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9

Quantifying DNA Damage Response in Irradiated Cells

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The cells were irradiated by 6Gy X-rays in their logarithmic growth phase, cultivated for one hour then fixed and permeabilized in 4% paraformaldehyde containing 0.2% Triton X-100 for 30min. Following overnight incubation with rabbit monoclonal anti-γ-H2AX (AB81299, Abcam;1:100) and rabbit monoclonal anti-53BP1 (ABCAM175933, Abcam;1:100) primary antibodies at 4°C overnight. The cells were probed with a fluorescent secondary antibody for 1h at room temperature the following day. The cells were counter stained with DAPI for 5–8min, and the γ-H2AX and 53BP1 foci were counted and photographed using a laser confocal microscope (Leica Microsystems, USA). The images were taken by a Zeiss LSM 800 Laser Confocal Scanning Microscope (Axio-Imager_LSM-800) with the oil in the objective [24] (link).
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10

Colocalization of GPI-Proteins in Lipid Rafts

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Colocalization of GPI-m36.4 or GPI-FluIgG03 with a lipid raft marker (GM1) was evaluated as described previously38 (link),43 (link). In brief, transduced TZM-bl cells were seeded (8000 cells/well) in a 35-mm glass dish with a 14-mm bottom well (Cellvis) and incubated for 2 days at 37 °C in 5% CO2. After two washes with PBS, the cells were fixed with 4% formaldehyde in PBS containing 1% BSA for 15 min and blocked with blocking buffer (5% goat serum in PBS containing 1% BSA) for 1 h. Then, the cells were sequentially stained with a mouse anti-His tag antibody, Alexa Fluor 488-conjugated goat anti-mouse IgG antibody, and Alexa Fluor 555-conjugated CtxB (Invitrogen Life Technologies). After three washes with PBS, the cells were further stained with DAPI in permeabilization buffer (blocking buffer plus 0.5% saponin) for 7 min. Images were captured with a laser confocal microscope (Leica Microsystems, Wetzlar, Germany).
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