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9 protocols using protease phosphatase inhibitors cocktail

1

PRRSV Viral-Like Particle Production

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TriEx Sf9 cells co-infected with recombinant baculoviruses containing PRRSV M, N, E, and GP5 gene were harvested at 72 h after infection. Cells were lysed with a lysis buffer containing 0.01 M Tris-HCl, 0.14 M NaCl, 0.025% NaN3, 1% Triton X-100, and protease/phosphatase inhibitors cocktail (Thermo Scientific, Rockford, IL). Cell lysates and purified VLPs were subjected to SDS-PAGE gel electrophoresis (Novex by Life Technologies, Carlsband, CA) and transferred to a nitrocellulose membrane (Life Technologies, Gaithersburg, MD). The membrane was then blocked for 1 h by rocking slowly at room temperature with 5% (w/v) milk powder in PBS plus 0.05% Tween 20 (PBST). Next, primary antibody, monoclonal mouse anti-HA antibody (Sigma-Aldrich, St. Louis, MO) diluted 1:5,000 in blocking buffer 5% (w/v) milk powder in PBST was added to the membrane and incubated overnight at 4 °C on the rocker. The secondary antibody, goat anti-mouse IRDye (LI-COR, Lincoln, NE) diluted 1:10,000 in PBST was added to the membrane and incubated for 1 h rotating at room temperature. Bands were visualized using the ODESSY Infrared Imaging System (LI-COR, Lincoln, NE).
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2

Protein Extraction from Frozen Heart Tissue

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Frozen heart tissue (without the atria) was ground up with a mortar and pestle under liquid nitrogen. For total protein extraction, heart tissue was homogenized in T-PER® tissue protein extraction reagent containing protease/phosphatase inhibitors cocktail (Thermo Scientific, Rockford, IL, United States) and 100 mM Phenylmethanesulfonyl fluoride (PMSF) following the manufacturer’s instruction. The extraction of nuclear/cytoplasmic protein was performed using NE-PER® nuclear and cytoplasmic extraction reagents (Thermo Scientific, Rockford, IL, United States) according to manufacturer’s instruction. Protein concentrations were measured by Bradford protein assay (Bio-Rad Laboratories, Philadelphia, PA, United States) using bovine serum albumin (BSA) as standards.
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3

Cytokine-induced Human Endothelial Cell Response

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Primary HUVECs at passage 2 were purchased from Bioresource Collection and Research Center (Hsinchu, Taiwan) and maintained in HUVEC growth medium (EBM-2, Lonza) with full supplements (2% fetal bovine serum, 0.4% human fibroblast growth factor-2, 0.1% vascular endothelial growth factor, 0.1% R3-insulin-like growth factor-1, 0.1% human epidermal growth factor, 0.04% hydrocortisone, 0.1% ascorbic acid, 0.1% GA-1000). Only passages 3 to 6 cells were used. Cells were treated with chemical inhibitors for 30 min before addition of inflammatory cytokine. At the indicated time point, cells were lysed with ice-cold lysis buffer (20 mmol/L Tris-HCl, pH 7.5, 150 mmol/L NaCl, 1 mmol/L EDTA, 1 mmol/L EGTA, 1% CHAPS, 2.5 mmol/L sodium pyrophosphate, 1 mmol/L β-glycerophosphate, 1 mmol/L Na3VO4) and protease/phosphatase inhibitors cocktail (Thermo Scientific) immediately.
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4

Western Blot Analysis of Cx43 Expression

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Cells were lysed in radioimmunoprecipitation assay (RIPA) lysis buffer supplemented with 5 mM EDTA and protease/phosphatase inhibitors cocktail (all from Thermo Fisher Scientific) for 30 min on ice. Western blotting was conducted as described previously [18 (link)], loading 30 µg of total proteins per well. For protein detection anti-Cx43 (dilution 1:500; catalog no. C6219, Sigma-Aldrich), donkey anti-rabbit HRP-conjugated (dilution 1:5000; SA1-200, Thermo Fisher Scientific) and anti-β-actin IgG1 HRP-conjugated (dilution 1:10,000; SC-47778, Santa Cruz Biotechnology) antibodies were used. The membranes were revealed using the SuperSignal® West Pico Chemiluminescent Substrate kit (Thermo Fisher Scientific) according to manufacturer′s instructions and analyzed in an ImageQuant LAS 500 (GE Healthcare, Uppsala, Sweden). Images were analyzed using ImageJ software (National Institutes of Health).
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5

Western Blot Analysis of Connexin 43

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Cells were lysed in radioimmunoprecipitation assay (RIPA) lysis buffer supplemented with 5 mM EDTA and protease/phosphatase inhibitors cocktail (all from Thermo Fisher Scientific, Waltham, MA, USA) for 30 min on ice. Western blotting was conducted as described previously [25 (link)], loading 30 μg of total proteins per well. For protein detection HRP-conjugated anti-Cx43 (dilution 1:500; clone F-7; Santa Cruz Biotechnology), and HRP-conjugated anti-β-actin (dilution 1:10,000; clone C4; Santa Cruz Biotechnology) antibodies were used. The membranes were revealed using the SuperSignal® West Pico Chemiluminescent Substrate kit (Thermo Fisher Scientific) according to manufacturer’s instructions and analyzed in an ImageQuant LAS 500 (GE Healthcare, Uppsala, Sweden). Images were analyzed using ImageJ software (National Institutes of Health). Unedited image of the western blot is shown in Figure S7.
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6

PAR2 Activation and 1-PPA Modulation

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In HepG2 cells culture media was removed and replaced with sterile PBS pH7.4. PAR2 activation was performed with increasing concentrations of SLIGKV-NH2 activating peptide (0, 1, 10, 100 µM) for 10 min at 37 °C and 5 CO2. Alternatively, cells were incubated with increasing concentrations of 1-PPA (0, 1, 10, 100 µM) for 30 min and then subjected to activation with 1 µM SLIGKV-NH2 for 10 min at 37 °C and 5 CO2. Cells were washed twice with PBS to remove the exceeding compounds, scraped in fresh PBS, and collected by centrifugation for 5 min at 500× g. Cellular pellets were resuspended in RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 0.25% deoxycholic acid, 1% NP-40, 1 mM EDTA) supplemented with protease phosphatase inhibitors cocktail (cat. 78441, Thermofisher scientific, Waltham, MA, USA) and incubated at 4 °C for 30 min.
Soluble protein fraction was obtained by centrifuging for 30 min at maximum speed at 4 °C. Protein content was estimated by Bradford assay, 20 µg of total protein was loaded for each condition on denaturing SDS-PAGE, followed by Western Blot.
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7

Protein Extraction from Mouse Liver

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A small piece of liver tissues from each mouse was ground up to powder with mortar and pestle in liquid nitrogen before homogenization in T-PER tissue protein extraction reagent (Cat. # 78510; ThermoFisher Scientific, Rockford, IL, USA) containing protease/phosphatase inhibitors cocktail (1:100; Cat. # 78440; ThermoFisher Scientific) and 100 mM phenylmethanesulfonyl fluoride (PMSF) before sonication. The suspensions were centrifuged at 14,000×g for 15 min at 4 °C and the supernatants were collected as total protein. The protein concentration was measured by Bradford protein assay (BioRad Laboratories, Hercules, California, USA).
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8

Cellular Fractionation and Western Blotting

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Equal number (3×106) of cells were harvested in ice-cold nuclear extraction buffer (NEB) (400 μl, 10 mM HEPES pH 7.9, 10 mM KCl, 1.5 mM MgCl2, 0.34 M sucrose, 10% glycerol, 1 mM dithiothreitol, 0.1% Triton X-100) containing protease/phosphatase cocktail inhibitors (Thermo Scientific, Cat# 78446) and incubated on ice for 5 min. 300 μl of whole cell lysates were centrifuged at 1300 × g for 4 min at 4°C. Supernatants were collected as cytoplasmic fractions and nuclei pellets were washed with NEB twice and re-suspended in 300 μl of NEB. Total cell lysates (remaining 100 μl of whole cell lysates), cytoplasmic and nuclear fractions were mixed with 4x Laemli buffer (v/v) and analyzed with desired antibodies by Western blotting.
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9

Nuclear Fractionation and Western Blot

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Equal number (3×106) of cells were harvested in ice-cold nuclear extraction buffer (NEB) (400 μL, 10 mM HEPES pH 7.9, 10 mM KCl, 1.5 mM MgCl2, 0.34 M sucrose, 10% glycerol, 1 mM dithiothreitol, 0.1% Triton X-100) containing protease/phosphatase cocktail inhibitors (Thermo Scientific, Cat# 78446) and incubated on ice for 5 min. 300 μl of whole cell lysates were centrifuged at 1300 × g for 4 min at 4°C. Supernatants were collected as cytoplasmic fractions and nuclei pellets were washed with NEB twice and re-suspended in 300 μl of NEB. Total cell lysates (remaining 100 μl of whole cell lysates), cytoplasmic and nuclear fractions were mixed with 4× Laemli buffer (v/v) and analyzed with desired antibodies by Western blotting.
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