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Chaetocin

Manufactured by Merck Group
Sourced in United States

Chaetocin is a laboratory product manufactured by Merck Group. It is a fungal metabolite that has been used in research as a chemical tool to study cellular processes. The core function of Chaetocin is to inhibit certain histone methyltransferase enzymes, which play a role in regulating gene expression. Chaetocin has been utilized in various experimental settings to investigate epigenetic mechanisms and their influence on biological systems.

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29 protocols using chaetocin

1

Chaetocin Effects on High-Salt Diet Rats

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All animal experiments in this study were approved by the Keio University Institutional Animal Care and Use Committee (09088) and were carried out in accordance with the Institutional Guidelines on Animal Experimentation at Keio University. Five-week-old male DS rats were purchased from Sankyo Labo Service Corporation, Inc. (Tokyo, Japan). The rats were divided into four groups: control [normal-salt diet containing 0.3% NaCl, NS (−)], normal-salt diet with chaetocin [0.25 mg/kg of chaetocin (Sigma-Aldrich Co. LLC., St. Louis, MO, USA), NS (ch+)], HF [high-salt diet containing 8% NaCl, HS (−)], and treatment [high-salt diet with 0.25 mg/kg of chaetocin, HS (ch+)] group. chaetocin was dissolved in dimethyl sulfoxide (DMSO). Rats in the treatment group were administered 0.25 mg/kg of chaetocin intraperitoneally twice a week from 6 weeks of age until 13 weeks of age, as previously reported46 (link). Animals were sacrificed, and tissues were stored appropriately for individual experiments.
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2

Chaetocin Induces Melanoma Cell Apoptosis

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Human melanoma cell lines, Sk-Mel-28, A375, IGR37, LU-1205 and MV3 were purchased from Shanghai Cell Bank of Chinese Academy of Sciences, and they were cultured in RPMI-1640 medium supplemented with 10% fetal bovine serum (FBS) (Gibco, USA), penicillin (100 IU/ml), and streptomycin (100 μg/ml) in a humidified incubator with 5% CO2 at 37°C. Human primary melanocytes were obtained Kanglang Company (Shanghai, China) and cultivated in melanocytes growth with 10% FBS. 3-[4, 5-dimethylthiazol-2-yl]-2, 5-diphenyltetrazolium bromide (MTT) and chaetocin were purchased from Sigma-Aldrich Corp. (St. Louis, MO). chaetocin was dissolved in dimethyl sulfoxide (DMSO) to prepare a 50 mM stock solution which was diluted to the final concentration with culture medium. The final concentration of DMSO was kept under 0.1% throughout the following studies, and showed no effect on cell morphology and proliferation in this study. The primary antibodies recognizing Bax, Bcl-2, procaspase-9/-3, cleaved caspase-9/-3, cytochrome c, PCNA, Nrf2, SOD2, catalase, and β-actin were purchased from Abcam Company (Cambridge, UK).
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3

Cigarette Smoke Exposure and Chaetocin Treatment in BALB/c Mice

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Six-week-old male BALB/c mice(n = 6 animals/group) were obtained from National Laboratory Animal Center(Taipei, Taiwan). The animals were housed in plastic cages and were provided Lab Diet 5001(PMI Nutrition International,. Brentwood, MO, USA) and water ad libitum during acclimatization. BALB/c mice were exposed to cigarette smoke using a cigarette smoke chamber equipped with whole-body exposure cages. The main-stream smoke from the combustion of 12 reference cigarettes(3R4F; Tobacco and Health Research Institute, KY, USA) were introduced into the whole-body exposure cages for a period of approximately 50 minutes/day, 5 days/week, for 12 weeks. Control mice were exposed to cigarette smoke-free HEPA-filtered air. The mass and number concentrations were monitoring using DusTrak(TSI DRX 8534) and P-Trak(TSI 8525) instruments, respectively. For the smoking/chaetocin group, smoking mice were given chaetocin(10 mg/kg body weight; Sigma-Aldrich Co. LLC.) by intraperitoneal injection on the final day. All animals were sacrificed at the end point after smoking challenge. The animal experiments were performed in compliance with the animal and ethics review committee of the Laboratory Animal Center at the Taipei Medical University, Taiwan(LAC-2014-0267).
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4

Cell Line Cultivation and Inhibition

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All used cell lines were held at 37 °C and 5% CO2 unless stated otherwise and authenticated by fingerprinting at the DSMZ (Braunschweig, Germany), cultivated as follows and split every 2–3 days: DAUDI (ACC-78), HG-3 (ACC-765), JEKO-1 (ACC-553), JVM-2 (ACC-12), JVM-13 (ACC-13), MINO (ACC-687), PGA-1 (ACC-766), RAMOS (ACC-603), REC-1 (ACC-584), VAL (ACC-586), WA-C3CD5+ (ACC-769) cells were grown in RPMI 1640 medium with 10% fetal calf serum (FCS) and MEC-1 (ACC-497) in Iscove’s MDM with 10% FCS. 293 T (ACC-635) cells were grown in Dulbecco’s MEM with 10% FCS and at 10% CO2. Inhibition of PRMT5 enzymatic activity was achieved with the indicated doses of EPZ015666 (Sigma, SML1421) for 96 h. Additional treatments were performed with the following chemicals: Veliparib (40 µM, 48 h; Selleckchem; S1004), SAHA (1 µM, 48 h; Sigma; SML0061), JQ1 (5 µM, 48 h; Sigma; SML0974), Chaetocin (50 nM, 24 h; Sigma; C9492).
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5

Oxidative Stress Induction in RPE Cells

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The generation of OS by GO treatment (1673; MP Biomedicals) has been described previously (34 (link)). To stably supply RPE cells with H2O2, confluent cells were cultured in a final concentration of 10 mU/mL GO in the serum-free medium. Chaetocin (C9492; Sigma-Aldrich), resveratrol (S1396; Selleck), and IL-18 (Sino Biological) were added to cells cultured in serum-free medium for 24 h with or without further GO treatment.
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6

Apoptosis Induction and Inhibition Assays

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TRAIL was commercially supplied (SuperKiller, Enzo Life Sciences, Farmingdale, NY, USA) or produced from 293T cells as described30 (link). Caspase inhibitors (BD Pharmingen, San Diego, CA, USA) were: Z-VAD-FMK (general caspase inhibitor), Z-FA-FMK (negative control). Bcl-2, Bcl-xL inhibitors ABT-263 and WEHI-539 were purchased from Cayman Chemicals (Ann Arbor, MI, USA). FasL and N-acetyl-L-cysteine (NAC) were purchased from Sigma-Aldrich (MO, USA). NUTLIN-3a was purchased from MedChemExpress (NJ, USA). Doxycycline was purchased from Sigma-Aldrich (Cat. No: D9891). D-luciferin was purchased from Biotium (CA, USA). Chaetocin was purchased from two sources (C9492–1mg, Sigma-Aldrich, MO, USA) and (S8068, Selleckchem, Houston, TX, USA). The epigenetic tool library was constructed as described31 (link).
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7

Chromatin Modulator Combination Assay

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Doxorubicin (Ref. 16416646, Thermo-Fisher Scientific), olaparib (AZD2281) (Ref. O-9201, LC Laboratories, Woburn, MA, United States), chaetocin (Ref. C9492, Sigma-Aldrich Merck), tazemetostat (Ref. S7128, Selleckchem) and JMJD2 inhibitor (5-carboxy-8HQ; Ref. 420201, Calbiochem, Merck-Millipore). All other reagents were from Sigma-Aldrich-Merck (Darmstadt, Germany) (Supplementary Table 1).
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8

Hypoxia Signaling Pathway Analysis

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Monoclonal HIF-1α antibody was purchased from BD Biosciences Pharmingen (San Diego, CA). Monoclonal p300 antibodies were purchased from Thermo Scientific (Rockford, IL) and Calbiochem (Billerica, MA). Alexa Fluor 680 goat anti-mouse IgG for fluorescence detection using the Odyssey Imaging System was from Molecular Probes (Eugene, OR). The FITC rabbit anti-mouse secondary antibody was used for immunofluorescence staining, and was purchased from Abcam (Cambridge, MA). Protein A/G Agarose was purchased from Thermo Scientific, and CoCl2 was purchased from Sigma (St. Louis, MO). Gliotoxin, chaetocin, and chetomin were purchased from Sigma, and sorafenib was purchased from Toronto Research Chemicals (Ontario, Canada). Each of the ETPs and sorafenib were stored frozen in DMSO. Odyssey blocking buffer was from LICOR (Lincoln, NE).
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9

Epigenetic Modulation of Myoblast Cultures

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Stock solutions of 100 mM 5-Aza-2′-deoxycytidine/Decitabine, (Sigma-Aldrich A3656, St. Louis, MO, USA) in DMSO, 5 mM Trichostatin A solution (TSA, Sigma-Aldrich T1952), and 10 mM chaetocin (Sigma-Aldrich C9492) in DMSO were stored at −20°C and diluted with PBS just before adding to the culture. To minimize culturing artifacts, low passage (<30 population doublings) myoblast cultures were used for all experiments and culture pairs for affected vs. healthy or affected vs. nonmanifesting were within 1 passage of each other in all instances. Myoblasts were seeded on collagen-coated plates at a cell density of 1.6 × 103/cm2. Starting the following day, Decitabine (5 μM final concentration) was added daily for a total of 3 days. When used, TSA (200 nM final concentration) or chaetocin (50 nM final concentration) was added to the cells for the last 24 h prior to sampling.
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10

Establishment and Maintenance of PDAC Cell Lines

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Human PDAC cell lines were obtained from the American Type Culture Collection (ATCC, Rockville, MD) and maintained according to their recommendations. L3.6, originally isolated by Bruns et al. [14 (link)], was cultured in appropriate media. The mouse PDAC cell line Pan02, syngeneic to C57BL/6, was obtained from DTP, DCTD Tumor Repository (National Cancer Institute) and maintained according to supplier’s recommendations. All cell lines were cultured at 37°C in a humidified incubator supplemented with 5% CO2 and passaged a maximum of 30 times prior to restarting cultures from cryogenically preserved stocks. Cell lines tested negative for mycoplasma within the last 6 months, and due to low passage, were not authenticated by our laboratory. For orthotopic tumors, Pan02 cells were incubated 72hrs with lentivirus to induce stable expression of luciferase. For in vitro studies, compounds were dissolved in DMSO and stored as 100uM aliquots at −80°C (MLN8237, Selleck Chemicals, ApexBio) or −20°C (chaetocin, Sigma-Aldrich).
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