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20 protocols using e ab 1003

1

Western Blot Analysis of EMT Markers

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Cells were collected with scrapers on ice-bath. The total protein was extracted with cell lysis buffer and protein concentration of each group was determined by bicinchoninic acid method (BCA, Beyotime, China). Forty µg proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF membranes. After blocking with skim milk, the membranes were incubated with polyclonal rabbit antibodies at 4 °C for a night and goat anti-rabbit IgG-HRP (1:5,000; E-AB-1003; Elabscience, China) at 37 °C for 1 hour. After washing the membranes with TBST for three times, the membranes were exposed and developed with Super ECL plus hypersensitive luminescence solution (Applygen, China). The relative expression of proteins was analyzed by Image J. The primary antibodies used are as follows: RGN (1:1,000; 17947-1-AP; Proteintech, USA), β-catenin (1:1,000; 51067-2-AP; Proteintech, USA), p-GSK-3β (1:1,000; ab75814; Abcam, UK), GSK-3β (1:1,000; 22104-1-AP; Proteintech, USA), MMP-3 (1:1,000; 17873-1-AP; Proteintech, USA), MMP-7 (1:800; 10374-2-AP; Proteintech, USA), MMP-9 (1:800; 10375-2-AP; Proteintech, USA), E-cadherin (1:1,000; 20874-1-AP; Proteintech, USA), N-cadherin (1:1,000; 22018-1-AP; Proteintech, USA), Vimentin (1:1,000; 10366-1-AP; Proteintech, USA), GAPDH (1:1,000; 10494-1-AP; Proteintech, USA).
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2

Histopathological Analysis of Tissue Samples

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In accordance with our previous research [38 (link)], the collected tissue samples (heart, liver, spleen, kidney, and brain) were fixed in 4% paraformaldehyde solution, dehydrated in 50–100% ethanol and distilled water, then paraffin embedded, cut into 5 μm slices, dewaxed twice in xylene, twice in 100–75% anhydrous ethanol, and finally hydrated. All specimens were stained with H&E. The pathological status of the collected tissue samples was analyzed, sections were observed, and images were collected using a standing optical microscope (Eclipse E100, Nikon, Tokyo, Japan).
As in our previous study [39 (link)], after dewaxing and hydration, the brain sections were added to a citric acid antigen retrieval buffer (pH 6.0) (G1202, Servicebio, Beijing, China) for antigen repair. Tissues were evenly covered with 3% bovine serum albumin and incubated at room temperature for 30 min. The tissues were then left overnight along with antibody Aβ1–42 (bs-0107R, Bioss, Beijing, China). The phosphate buffer solution (PBS) was washed thrice before incubation with horseradish peroxidase-labeled goat anti-rabbit antibody (E-AB-1003, Elabscience, Wuhan, China) at 25 °C for 1 h. The sections were then restrained with diaminobenzidine tetrachloride solution and hematoxylin and observed under a microscope (Eclipse E100).
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3

RIPA-Based Protein Extraction and Western Blot

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With the application of radioimmunoprecipitation assay (RIPA) buffer (P0013B, Beyotime Biotechnology, China), extraction of total protein from cells were conducted. The obtained proteins were measured using a BCA Protein Assay Kit (P0010, Beyotime Biotechnology). Protein lysates (30μg) were separated by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE), and then transferred onto membranes of polyvinylidene fluoride (Millipore, USA), which was subsequently blocked in 5% skim milk diluted using PBS with Tween-20 for 1 h, followed by incubation with primary antibodies rabbit antiTHBS1 (37879S, Cell Signaling Technology, USA) as well as rabbit anti-β-tubulin (AF7011, Affinity, China) at 4 diluted in foregoing blocking buffer. After extensively washed in Tris-buffered saline with 0.1% Tween® 20 detergent, membranes were further incubated with secondary antibodies (E-AB-1003, Elabscience, China) at room temperature for a period of 2 h. After triply washing of membranes, an enhanced chemiluminescence (CL) detection system was applied to detect the proteins on them (Bio-Rad Laboratories, Inc.). Luminescence intensity was analyzed using ImageJ, with resulting values normalized to β-tubulin densitometric values.
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4

Exosome Protein Characterization by SDS-PAGE

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Exosomal proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE kits, Boster Biological Technology Co., Ltd. Wuhan of China) and transferred onto 0.22 μm polyvinylidene fluoride (PVDF) membranes (Millipore, USA) by wet electro-transfer. Membranes were blocked in 5% non-fatty milk for 1 h. Then primary antibodies were added for overnight incubation at 4 ℃ (anti-CD9: SBI, EXOAB-CD9A-1, 1:1000; anti-CD81: Immunoway, YT5394, 1:1000). After washing by 0.1% PBST (10 min × 3 times), the membranes were incubated with the horseradish peroxidase (HRP)-conjugated secondary antibody (Elabscience, E-AB-1003, 1:4000) for 1 h at room temperature. After washing by 0.1% PBST (10 min × 3 times), enhanced chemiluminescence (ECL) detection kit (Boster Biological Technology Co., Ltd. Wuhan of China) was used to detect protein bands by Tanon-5200 automatic chemiluminescence imaging analysis system (Tanon Science & Technology Co., Ltd. Shanghai of China).
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5

Molecular Mechanisms of Huanglian and Wuzhuyu in Lipid Metabolism

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Huanglian and Wuzhuyu tablets were bought from the affiliated Hospital of Chengdu University of TCM. The triglycerides (TG) (Cat: A110-1-1), total cholesterol (TC) (Cat: A111-1-1), high-density-lipoprotein cholesterol (HDL-C) (Cat: A112-1-1), and low-density-lipoprotein cholesterol (LDL-C) (Cat: A113-1-1) kits were purchased from Nanjing Jiancheng Bioengineering Inc. (Nanjing, China). The tumor necrosis factor-α (TNF-α) (Cat: MM-0132M1), interleukin 6 (IL-6) (Cat: MM-46428M2), vascular cell adhesion molecule-1 (VCAM-1) (Cat: MM-0129M1), intercellular adhesion molecule-1 (ICAM-1) (Cat: MM-0183M1), and monocyte chemotactic protein-1 (Cat: MCP-1) (MM-0082M1) kits were purchased from Meimian Biotechnology (Nanjing, China). Anti-beta actin (Cat: ab8226) was taken as the loading control and purchased from Abcam (Shanghai, China). Mitogen-activated protein kinase (MAPK) p38 antibody (Cat: BF8015) and phospho-MAPK (Thr180/Tyr182) p38 antibody (Cat: AF4001) were purchased from Affinity (Liyang, China). NF-κBp65 (Cat: A2547) and phospho-NF-κB p65 (Cat: AP0124) were purchased from Abclonal (Wuhan, China). Anti-rabbit and mouse secondary antibodies (Cat: E-AB-1003, E-AB-1001) were purchased from Elabscience (Wuhan, China).
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6

Histological Evaluation of Adipose and Organ Tissues

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The iWAT, eWAT, pWAT, liver, and pancreas were fixed in 10% formalin buffer for 48 h, embedded in paraffin, and sliced into 5 μm thick sections. For Oil Red O staining, the sections of liver were stained with 3.7 mM Oil Red O dissolved and then counterstained with hematoxylin as in a previous study [33 (link)]. For hematoxylin and eosin (H&E) staining, the sections were stained with hematoxylin for 5 min and eosin for 3 min at 25 °C as in our previous study [23 (link)]. For immunohistochemistry staining, the sections of pancreas were blocked with 5% bovine serum albumin (Gen-view Scientific, Galveston, TX, USA), then incubated with anti-insulin antibody (#ab181547, 1:2000 dilution) (Abcam, Cambridge, MA, USA) at 4 °C overnight. The sections were then incubated with horseradish peroxidase (HRP)-labeled goat anti-rabbit antibody (#E-AB-1003) (Elabscience, Wuhan, China) at 4 °C for 2 h. Color development was performed using a DAB Kit (#34065, Thermo Fisher, Carlsbad, CA, USA), and hematoxylin was used for counter staining.
The stained slides were observed under a light microscope (Olympus, Tokyo, Japan) and photographed.
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7

Western Blot Protein Analysis

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The total proteins from each sample were separated by electrophoresis on 8% sodium dodecyl sulfate-polyacrylamide gels and transferred to polyvinylidene fluoride membranes (IPVH00010, Merck Millipore, USA). After being blocked with 5% skim milk for 1 h at room temperature, the membranes were incubated with primary antibodies at 4° C overnight (Supplementary Table 2). Then, the membranes were incubated with peroxidase-conjugated secondary antibodies (1:5000, E-AB-1003, Elabscience, China) for 1 h at room temperature. The proteins on the membranes were visualized with Immobilon Western HRP Substrate (WBKLS0500, Merck Millipore) and scanned on a SuperSignal chemiluminescent detection system (BioRad, USA).
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8

Histopathological Analysis of ApcMin/+ Mice

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The colorectum, heart, liver, spleen, kidney, and lung specimens collected from ApcMin/+ mice were fixed in 4% paraformaldehyde for 48 h. Samples were embedded in paraffin, sliced into 5 μm sections, and stained with hematoxylin and eosin (H&E), as described in a previous study (Elsherbiny et al., 2017 (link)).
Other sections of the colorectum (especially the colorectal tumor portion) and spleen were blocked with 5% bovine serum albumin (Gen-view Scientific, Galveston, TX, United States ) for 4 h and incubated with primary antibodies including CD4 (25229S, 1:200 dilution) and CD8 (98941S, 1:800 dilution) (Cell Signaling Technology, Danvers, MA, United States ), IFN-γ (PA5-95560, 1:1000 dilution) and IL-4 (PA5-25165, 1:50 dilution) (Invitrogen, Carlsbad, CA, United States ) at 4°C overnight, followed by incubation with horseradish peroxidase (HRP)-labeled secondary antibodies (E-AB-1003 or E-AB-1001) (Elabscience, Wuhan, China) at 4°C for 2 h. Color development was performed using the Metal Enhan DAB Substrate Kit (34,065, Thermofisher, Carlsbad, CA, United States ), and hematoxylin was used for counterstaining. All the slides were observed under a light microscope (Olympus Corporation, Tokyo, Japan). ImageJ software (National Institutes of Health, Bethesda, MD) was used to quantify the pixel density for the semi-quantitative densitometric analysis of protein expressions.
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9

GnRH Protein Expression Analysis

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Total protein was collected from HNCs that had been transfected for 36 h using a whole cell extraction kit (EX1101, Solarbio, Beijing, China). Protein concentrations were determined using the BCA protein assay. Then, the protein samples were incubated with rabbit anti-GnRH (polyclonal, 20075, ImmunoStar, 1:1000) and anti-GAPDH (polyclonal, AF7021, Affinity, Jiangsu, China) antibodies at 4°C overnight and then incubated with HRP-conjugated goat anti-rabbit (E-AB-1003, Elabscience, Wuhan, China, 1:3000) for 50 min. The OD value of the target band was detected with an AlphaEaseFC software system (Alpha Innotech Corporation, San Leandro, CA).
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10

Immunoblotting Quantification of Orai2 and GAPDH

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Equal amounts of protein were electrophoresed on 10% SDS-PAGE gels and transferred to PVDF membranes for immunoblotting. The membranes were blocked with a 5% non-fat milk dilution in TBST for 1 hour at RT and incubated with dilutions of primary antibody, which is Orai2 (20592-1-AP, Protein tech, dilution ratio of 1:1,000) or GAPDH (AF7021, Affinity, dilution ratio of 1:1,000) kept overnight at 4°C. After incubation with HRP-conjugated goat anti-rabbit IgG (E-AB-1003, Elabscience, dilution ratio of 1:5,000), chemiluminescence detection was performed by using the ECL plus Western blotting detection reagent (GE Health, Little Chalfont, United Kingdom), and immunoblots were quantified by densitometry using a chemiluminescence gel imaging analysis system (P and Q, Shanghai, China).
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