The largest database of trusted experimental protocols

51 protocols using y 27632

1

Differentiation of hPSCs into CNS Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human embryonic stem cells (hESC) or iPSC cultures were maintained in Essential 8 medium (Life Technologies, A1517001). Two healthy control hESC lines (H9, RUES) and two healthy control iPSC lines (J1, J2) were used in this study. The differentiation of hESCs or iPSCs (Together referred as hPSC) into CNS neurons was promoted as previously described 38 (link),39 (link). In short, for the first 10 days, the serum-free differentiation medium used consisted of Essential 6 (Life Technologies, A1516401) supplemented with 500 nM LDN189193 (Stemgent, #04–0074), 10 μM SB431542 (STEMCELL Technologies, #72232) and 5 μM XAV939 (Tocris, #3748/10). On day 10, the medium was replaced with N2 (STEMCELL Technologies, #07156), supplemented with 1:50 B-27 (Life Technologies, #12587–100), with daily replacement for eight days. The cells were then detached with Accutase (Innovative Cell Technologies, AT-104) and replated in N2 supplemented with 10 μM Y-27632 (R&D Systems, #1254) and 6 μM CHIR 99021(Tocris, #4423). Finally, after the amplification of neural progenitor cells for one or two passages, the cells were detached with Accutase, counted, and plated in wells of an appropriate size, in N2 supplemented with 10 μM Y-27632, B-27 (1:50) and 10 μM DAPT (R&D Systems, #2634/50). Neurons were left to mature for four weeks before the experiments.
+ Open protocol
+ Expand
2

Differentiation of hPSCs into CNS Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human embryonic stem cells (hESC) or iPSC cultures were maintained in Essential 8 medium (Life Technologies, A1517001). Two healthy control hESC lines (H9, RUES) and two healthy control iPSC lines (J1, J2) were used in this study. The differentiation of hESCs or iPSCs (Together referred as hPSC) into CNS neurons was promoted as previously described 38 (link),39 (link). In short, for the first 10 days, the serum-free differentiation medium used consisted of Essential 6 (Life Technologies, A1516401) supplemented with 500 nM LDN189193 (Stemgent, #04–0074), 10 μM SB431542 (STEMCELL Technologies, #72232) and 5 μM XAV939 (Tocris, #3748/10). On day 10, the medium was replaced with N2 (STEMCELL Technologies, #07156), supplemented with 1:50 B-27 (Life Technologies, #12587–100), with daily replacement for eight days. The cells were then detached with Accutase (Innovative Cell Technologies, AT-104) and replated in N2 supplemented with 10 μM Y-27632 (R&D Systems, #1254) and 6 μM CHIR 99021(Tocris, #4423). Finally, after the amplification of neural progenitor cells for one or two passages, the cells were detached with Accutase, counted, and plated in wells of an appropriate size, in N2 supplemented with 10 μM Y-27632, B-27 (1:50) and 10 μM DAPT (R&D Systems, #2634/50). Neurons were left to mature for four weeks before the experiments.
+ Open protocol
+ Expand
3

Differentiation of Endothelial Cells from Human Pluripotent Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human endothelial cells were generated as previously described7 (link). Maintenance and formation of EBs was performed as described in the paragraph cardiac differentiation. For induction of differentiation of mesodermal progenitor cells, EBs were cultivated in Pluronic F-127 (Sigma-Aldrich, P2443) -coated flasks in StemPro®-34 (Gibco 10639-011) supplemented with 4 mg/ml PVA; 400 µM 1-thioglycerol, Sigma-Aldrich M6145; 2 mM L-glutamin, Gibco 25030; 5 mg/L transferrin, Sigma-Aldrich T8158; 5 µg/L selenium, Sigma-Aldrich S5261; 0.5% Penicillin/Streptomycin, Gibco 15140; 10 µM Y-27632, biorbyt orb60104 and 10 ng/ml BMP-4, R&D Systems 314-BP; 6 ng/ml Activin-A, R&D systems 338-AC; 5 ng/ml basic FGF, R&D systems 233-FB for 3 days at 37 °C, 90% humidity, 5% CO2, 5% O2 with daily medium change. To differentiate endothelial cells, EBs were then cultured on Geltrex® in StemPro®-34, containing 400 µM 1-thioglycerol, Sigma-Aldrich M6145; 2 mM L-glutamin, Gibco 25030; 1 mM magnesium ascorbyl phosphate; 5 mg/L transferrin, Sigma-Aldrich T8158; 5 µg/L selenium, Sigma-Aldrich S52610.5% Penicillin/Streptomycin, Gibco 15140; 1 µM Y-27632, biorbyt orb60104; 100 ng/ml VEGF, R&D Systems 293-VE and 10 ng/ml bFGF, R&D Systems 233-FB. For 3 days, EBs were cultured in a hypoxic environment (5% CO2, 5% O2), followed by 9 days under normoxic conditions. Medium was changed every other day.
+ Open protocol
+ Expand
4

Endogenous eGFP-tagged hiPSC Sarcomere Maintenance

Check if the same lab product or an alternative is used in the 5 most similar protocols
PGP1 hiPSCs with an endogenous eGFP tag on the sarcomere gene TTN31 (link) were grown in Matrigel-coated 6-well tissue-culture dishes, maintained in stem cell maintenance media (mTESR1, STEMCELL Technologies), and passaged every 2–3 days (passage range 55–70) in the presence of 5μM ROCK inhibitor Y-27632 (R&D Systems, 125410).
+ Open protocol
+ Expand
5

Culturing RUES2 Embryonic Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Rockefeller University embryonic stem cell line-2 (RUES2) was a kind gift from Dr. Yen-Wen, Liu [Department of Internal Medicine, National Cheng Kung University (NCKU) Hospital]. Before culturing the cells, growth factor-reduced Matrigel (#354230; Corning, Carlsbad, Leicestershire, UK) was added to the culture plate as an extracellular matrix coating. Cells were then seeded on Matrigel-coated plates supplemented with essential-8 (E8) medium (#A1517001; Life Technologies, Carlsbad, CA, USA) and 5 µM Y27632 (ROCK inhibitor; R&D Systems, Minneapolis, Minnesota, USA). E8 medium renewal was performed daily without adding Y27632. RUES2 was passaged every 2–3 days using Accutase (Innovative Cell Technologies, San Diego, CA, USA) for cell detachment.
+ Open protocol
+ Expand
6

Establishment and Culture of Induced Pluripotent Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
NCRM5 and NCRM5-AAVS1-CAG-EGFP (NCRM5 iPSCs with CAG-EGFP integrated at Chr.19 AAVS1 safe harbor locus) were established by the iPSC core facility of the National Heart, Lung, and Blood Institute in NIH. Mart1-iPSC were kindly provided by Riken BBC, in Japan. SCD-iPSC line was established from bone marrow stromal cells isolated from a sickle cell disease patient.34 (link) All hiPSCs were cultured on Matrigel (Corning) or iMatrix-511 (Nippi) coated dishes in xeno-free hiPSC medium Essential 8 (Invitrogen) or StemFit Basic02 (Ajinomoto Co., Inc). They were routinely passaged as small clumps/single cells using 0.5 mM EDTA in phosphate buffered saline (PBS) with the split ratio of 1:6 to 1:10 every 3 to 4 days after reaching 65%–80% confluence. After EDTA treatment, hiPSCs were transferred to new Matrigel or iMatrix-511 coated dishes in hiPSC medium supplemented with ROCK inhibitor Y-27632 (10 μM, R&D Systems Inc). Next day, the medium was changed to hiPSC medium without ROCK inhibitor.
+ Open protocol
+ Expand
7

Nephron Progenitor Induction from iPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three RCS-iPSCs and three control human iPS cell lines were induced toward nephron progenitors as previously described9 (link), with a minor modification. Briefly, human iPSCs were aggregated at 5 × 104 cells in V-bottomed 96-well low-cell-binding plates (Sumitomo Bakelite Co., Ltd.) using the medium containing 10 μM Y27632 and 0.5 ng/mL human bone morphogenic protein 4 (BMP4, R&D System). After 24 h (on day 1), the medium was changed to one containing 1 ng/mL human activin A (R&D System) and 20 ng/mL human fibroblast growth factor 2 (FGF2, R&D System). On day 3, the medium was changed to one containing 1 ng/mL human BMP4 and 10 μM CHIR99021 (Wako). On day 9, the medium was changed to one containing 10 ng/mL activin A, 3 ng/mL BMP4, 3 μM CHIR99021, 0.1 μM retinoic acid (Sigma), and 10 μM Y27632. On day 11, the medium was changed to one containing 1 μM CHIR99021, 5 ng/mL human FGF9 (R&D System), and 10 μM Y27632. On day 14, induced aggregates were cultured with NIH3T3 fibroblast expressing Wnt4 cells36 (link) supplied with DMEM containing 10% fetal bovine serum (FBS).
+ Open protocol
+ Expand
8

Cell Line Inhibitor Evaluation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were obtained from the following sources: 16HBE (Durgan et al., 2015 (link)) (from lab of Dieter Gruenert, UCSF), MCF7 (Sun et al., 2014a (link)) (Lombardi Cancer Center, Georgetown University), HCT116 (Sun et al., 2014a (link)) (from lab of David Boone, University of Notre Dame), 293FT (Durgan et al., 2011 (link)) (Invitrogen); all tested negative for mycoplasma (MSKCC core facility) and were cultured as described previously. The following inhibitors were used: Blebbistatin (100 μM; Sigma, UK), C3 Transferase (1 μg/ml; CT04 Cytoskeleton, Denver, CO), Nocodazole (100 ng/ml; Sigma), RO-3306 (5 μM; Sigma), STLC (20 μM, Santa Cruz, Dalla, TX), Taxol (1 μM; EMD), Y-27632 (10 μM; R&D, Minneapolis, MN); high-grade DMSO was used as a carrier control (1:1000; Sigma).
+ Open protocol
+ Expand
9

Differentiation of iPSC-Derived Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
E7VI medium: DF3S base media (Gibco #ME110262L1), SB341542 (5 µM), VEGFA165 (50 ng/mL), FGF2 (100 ng/mL), Transferrin (10.7 µg/mL), Insulin (20 µg/mL).
E8BAC medium: E8 base media (Gibco #A1517001), BMP4 (5 ng/mL), Activin A (25 ng/mL), CHIR 99021 (1 µM).
Differentiation of endothelial cells (ECs) was carried out following our previously published protocol.73 (link)
Human induced pluripotent stem cells (iPSCs) were grown in E8 media on Matrigel coated plate. Next, cells were dissociated using Versene (Gibco #15040066) and incubate for 3–5 min at 37°C until colonies detach. Cells were cultured in Matrigel coated wells of 6 well plates in E8BAC media for 2 days (to 100% confluence) with the addition of 10 µM Y27632 (R&D Systems #1254/10). Cells were then grown in E7VI medium for an additional 3 days. Cells were then harvested with Accutase (Gibco #A1110501) to produce a single cell suspension and centrifuged at 300×g for 5 min and resuspend 1 × 108 cells in 300 µL of cold MACS buffer consisting of 1× PBS, 0.5% BSA (Fisher #BP1600), and 2 mM EDTA (Invitrogen #15575020). A 100 µL of FcR blocking reagent and 100 µL of CD34 microbeads (Miltenyi Biotec #130-046-702) were added and the mixture was incubated at 4°C for 30 min. Endothelial cells (ECs) were then isolated with CD34 microbeads by auto MACS (Miltenyi) to yield purified populations of CD34+CD31+ cells, which were cryopreserved.
+ Open protocol
+ Expand
10

Elucidating Purinergic Signaling Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Suramin and Reactive-Blue-2 (RB-2) were obtained from MP Biomedical (Santa Ana, CA, United States). DMEM/F12, advanced DMEM/F12, HEPES, L-glutamine, penicillin, streptomycin, FBS, Dulbecco’s PBS, apyrase, formyl-methionine-leucyl-phenylalanine (FMLP), LPSs, adenosine 5’-triphosphate (ATP), adenosine 5’-diphosphate (ADP), uridine 5’-triphosphate (UTP), uridine 5’-diphosphate (UDP), adenosine, Zm 241385, and fibroblast growth factor 2 (FGF2) were purchased from Sigma–Aldrich (Oakville, ON, Canada). Collagenase type I, SuperScript III, gentamicin, B-27 and N-2 supplements, polyinosinic–polycytidylic acid [poly(I:C)], EDTA, and TRIzol were obtained from Invitrogen (Carlsbad, CA, United States). Collagen type I was purchased from BD Bioscience (San Jose, CA, United States). Y-27632, mrEGF, Wnt-3a, and R-spondin were purchased from R&D Systems (Minneapolis, MN, United States). Noggin and M-CSF were purchased from PeproTech (QC, Canada). SYBR Green and DNAseI were from Roche Diagnostics (Indianapolis, IN, United States). Flagellin was obtained from InvivoGen (San Diego, CA, United States). Oligo(dt)18 was obtained from Fisher Scientific (Ottawa, ON, Canada). MRS 2500, MRS 2179, MRS 2578, AR-C 118925XX, PSB 1114, and 5-BDBD were purchased from Tocris Bioscience (Minneapolis, MN, United States).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!