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5 protocols using ammonium bicarbonate

1

Quantitative Proteomic Analysis of Membrane Proteins

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The standards which included glycyrrhizic acid, glycyrrhetinic acid, dehydrotumulosic acid, isoliquiritin, liquiritin, atractylenolide III, cinnamic acid, and schisandrin (≥98% purity) were all procured from Hongyong Biotechnology Co., Ltd. (Shanghai, China). Sulfatase was procured from Helix pomatia (Type H-1, Sulfatase ≥10, 000 units/g solid, Sigma, United States). The peptides LTIIPQDPILFSGSLR, GVALPETIEEAENLGR, AAATEDATPAALEK, TFQFPGDIESSK, LLLSGFQEELR, STALQLIQR, NTTGALTTR, EENLGITK, SVQPELK, and TYPVPFQR, as well as stable isotope-labeled internal standards (≥98% purity) were synthesized by Bankpeptide Biological Technology, Co., Ltd. (Hefei, China). The ProteoExtract Native Membrane Protein Extraction Kit was purchased from Merck KGaA (Darmstadt, Germany). The BCA Protein Assay Kit and In-Solution Tryptic Digestion Kit were obtained from Pierce Biotechnology (Rockford, IL, United States). Formic acid dedicated to mass spectrometry (99% purity); ammonium bicarbonate (98% purity); and sodium deoxycholate (98% purity) were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). Acetonitrile and methanol, both MS grades, were obtained from Merck KGaA (Darmstadt, Germany).
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2

Oridonin-loaded PLGA Nanoparticles for Liver Cancer

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Oridonin was obtained from the Shaanxi Huike Botanical Development Co., Ltd., Shaanxi, China. Poly(lactic-co-glycolic)acid (PLGA, lactide/glycolide, 50:50, mol/mol, MW 10 kDa) was produced by Jinan Daigang Biomaterial Co., Ltd., Shandong, China. Gemcitabine, used as a positive control drug, was purchased from Hansoh Pharmaceutical Co., Ltd., Jiangsu, China. Polyvinyl alcohol (PVA, 87%–89% alcoholysis, MW 75000 Da) was purchased from the Aladdin Industrial Corporation, Shanghai, China, and ammonium bicarbonate was purchased from the Sinopharm Chemical Reagent Co., Ltd., Beijing, China. Cy7 was purchased from Fanbo Biochemicals Co., Ltd., Beijing, China. 3-Methyl cholanthrene (MCA, Sigma, USA), diethyl nitrosamine (DEN, Tokyo Chemical Industry, Japan), and iodized oil (Guerbet, French) were used. Anti-BCL-2 and anti-BAX antibodies were from the Cell Signaling Technology Inc. (Danvers, USA). All other chemicals and solvents were of analytical grade or high performance liquid chromatographic (HPLC) grade.
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3

GMDTC Synthesis and Analysis Protocol

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The GMDTC (purity > 95% by HPLC-UV, content > 80% by NMR) was synthesized at Asymchem Laboratories (Tianjin) Co., Ltd. (Tianjin, China). The metolazone (99.88%), used as the internal standard (IS), was purchased from Dalian Meilun Biotech Co., Ltd. (Dalian, China). The methanol and acetonitrile for the gradient HPLC was purchased from Thermo Fisher Scientific Inc. (Tustin, CA, USA). Ammonium bicarbonate, ammonia, and disodium dihydrogen ethylenediaminetetraacetate were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China.).
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4

Ethanol and Vanillin Extraction

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Ethanol (AR) and Vanillin (AR) were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). MEthanol and acetonitrile (both HPLC-grade) were obtained from Merck Chemicals (Shanghai, China). Concentrated sulfuric acid, calcium oxide, ammonium bicarbonate and et.al. were obtained from Sinopharm and were of analytical grade unless otherwise stated.
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5

HPLC-Based Amino Acid Analysis Protocol

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2-Chlorophenylalanine, HPLC-grade acetonitrile, acetic acid, ethanol, methanol, acetone, and formic acid (FA); Tris, sodium dodecyl sulfate, hydrochloric acid, dithiothreitol (DTT), iodoacetamide (IAA), and ammonium bicarbonate were purchased from Sinopharm Chemical Reagent Co. Ltd., Shanghai, China. Sodium tricitrate, dl-dithiotriol, urea, sodium dihydrogen phosphate, hydroxypropyl methylcellulose were purchased from Sigma-Aldrich company, USA. Bicinchoninic acid (BCA) assay were purchased from Beyotime Biotechnology, Shanghai, China. Trypsin (TPCK-treated) was purchased from Thermo Fisher Scientific (Rockford, IL, USA). Pure water for the experiment was prepared with ultrapure water (18.2 MΩ·cm, 25 °C).
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