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15 protocols using abcb1

1

Comprehensive Protein Analysis Protocol

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Total cell lysate extraction and western blotting were performed using a previously described protocol.14, 15 The extracted protein was quantitated using a protein assay (Bio‐Rad Laboratories) and was transferred to a membrane using a transfer system (Bio‐Rad Laboratories, Hercules, CA, USA). Then, the membranes were probed with primary antibodies diluted with 5% BSA overnight at 4°C. After washing more than 3 times using PBS‐tween, the membranes were incubated with the secondary antibodies for 1 hour at 25°C. To detect specific signals, we examined the membrane using the ECL Prime Western Blotting Detection System (GE Healthcare) and LAS‐3000 (Fuji Film). The primary antibodies were as follows: p‐HER2 (Tyr1221/1222), HER2, p‐EGFR (Tyr1068), EGFR, p‐MAPK (Erk1/2) (Thr202/Tyr204), MAPK (Erk1/2), p‐AKT (Ser473), AKT, IGF‐I receptor (IGF‐1R), p‐IGF‐I receptor (phospho‐IGF‐1R) (Tyr1135/1136), MET, p‐MET(Tyr1234/1235), YES, Src, p‐Src (Tyr416), ALDH1A1, ABCB1, E‐cadherin, vimentin and p‐AXL(Tyr702) (Cell Signaling Technology, Danvers, MA, USA), AXL (R&D Systems, Minneapolis, MN, USA), and actin (Santa Cruz Biotechnology, Dallas, TX, USA). The secondary antibodies used in this study were as follows: goat anti–mouse IgG‐HRP, goat anti‐rat IgG‐HRP and donkey anti–goat IgG‐HRP (Santa Cruz Biotechnology).
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2

Western Blot Analysis of Drug Transporters

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Western blot analysis was performed on cell extracts of the indicated cell lines that had been transfected for 48 h with the miRNA sequences. Immunoblots were performed from whole cell lysate prepared using RIPA Buffer supplemented with PMSF, and phosphatase inhibitors. Cell lysates were quantified for protein content using a bicinchoninic acid protein assay kit. SDS PAGE was used to separate the proteins, with 30 µg total protein per lane on 5% SDS-PAGE. Protein samples were transferred to 0.22-mm polyvinyl difluoride membranes. After saturation in Tris-buffered saline with Tween-20 and 5% powdered milk, the membranes were incubated with anti-eIF4G (cat. no., 2617S; dilution, 1:1,000) and anti-β-actin (cat. no., 8457S; dilution, 1:1,000) antibodies purchased from Cell Signaling Technology, ABCB1 (cat. no., ab170904; dilution, 1:1,000), ABCC1 (cat. no., ab3368; dilution, 1:1,000) and ABCG2 (cat. no., ab108312; dilution, 1:1,000) purchased from Abcam, overnight at 4°C. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (cat. no., sc-2357; dilution, 1:5,000 Santa Cruz Biotechnology, Inc., Dallas, TX, USA) for 1 h at room temperature. The signals were visualized using ECL Substrates (Tanon Ltd, shanghai, China) and quantified using AlphaImager 2200 software.
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3

Multidrug Resistance Mechanisms Evaluation

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Bufalin, Doxorubicin (DOX), Rho-123, verapamil and Lucifer yellow were obtained from Sigma–Aldrich Chemical Co. (St. Louis, MO, USA). Minimum Essential Media (MEM), fetal bovine serum (FBS), non-essential amino acids (NEAA), Ham's F-12K (Kaighn’s) Medium (F12K), and Hank's balanced salt solution (HBSS), were obtained from Gibco BRL (Carlsbad, CA, USA). RPMI 1640 and phosphate-buffered saline (PBS) were from Hyclone (Thermo Scientific, Logan, UT). Annexin V-FITC Apoptosis Detection Kit was purchased from BD Biosciences (Beijing, China). Cell Counting Kit-8 (CCK-8) was purchased from Dojindo (Kumamoto, Japan). A ABCB1 ATPase assay system was purchased from Promega (Madison, WI, USA). The primary antibodies for ABCB1 (#13342) and β-actin (#3700) were sourced from Cell Signaling Technology (Boston, USA). The secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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4

Antibody Detection in SRGN Pathway

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Detailed procedure was as described in a previous study (Wang et al., 2019 (link)). Primary anti-human antibody against SRGN was purchased from Santa Cruz Biotechnology. CTSL, ABCB1, ABCG2, LC3, Bax, Bcl-2, and GAPDH primary anti-human antibodies were all purchased from Cell Signaling Technology.
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5

Glioblastoma Protein Extraction and Analysis

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Proteins were extracted by lysing GBM cell lines in radioimmunoprecipitation assay (RIPA) buffer with a protease/phosphatase inhibitor cocktail. Then the sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transfer were performed, followed by blocking in 5% BSA as described previously (Xiao et al., 2018 (link); Yu et al., 2018 (link)). Relevant primary antibodies were used for detecting target bands overnight at 4°C (integrin αv135, t-/p-FAK, p-paxillin, t-/p-AKT, t-/p-EGFR, p53, cleaved PARP, ABCB1, p-ERK1/2, and cyclin D1, obtained from Cell Signaling Technology, Danvers, MA, United States, dilution 1:1,000). Horseradish peroxidase (HRP) goat anti-mouse IgG or anti-rabbit IgG were used as secondary antibodies (dilution 1:2,000). Immunoreactive bands were visualized using Clarity ECL substrate (Bio-Rad, Hercules, CA, United States) and imaged (MyECL imager) without overexposing the target bands. Equal loading was assessed after probing the same membrane with anti-GAPDH antibody (Thermo Fisher Scientific, Waltham, MA, United States). Images of blots were analyzed using ImageJ (NIH).
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Protein Expression Analysis by Western Blot

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Western blot analysis was performed according to a previous description.17 Primary antibodies included ABCB1, XIAP and β-actin (Cell Signaling Technology). Horseradish peroxidase-conjugated goat anti-rabbit IgG antibody (1:5000, Beyotime) was applied as a secondary antibody. Signals were detected using chemiluminescence.
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7

Comprehensive Protein Analysis using Western Blot

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Total protein was obtained by lysing cells with Laemmli Sample Buffer (Biorad) and the membrane protein was extracted according to the manufacturer’s instructions from the Membrane Protein Extraction Kit (Beyotime). Cleared lysates were resolved by SDS-PAGE, transferred to PVDF membrane and probed with specified antibodies. The following primary antibodies were purchased from Cell Signaling Technology: phospho-Akt(4060), Akt(4691), phosphop-p44/42 MAPK(4370), p44/42 MAPK(4695), HER2(4290), phospho-HER2(2249), Cyclin D1(55506), p27 Kip1(3686), c-myc(5605), ABCB1(13978), Na,K-ATPase α1 (23565, control for membrane proteins), and GAPDH(5174, control for total proteins).
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8

Protein Expression Analysis of Cancer Cells

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Transfected cells were harvested, and protein concentrations were analyzed by a BCA protein assay kit (Beyotime, China). Equal amount of total protein (40 μg) was separated by 10% SDS-PAGE and transferred onto PVDF membranes. Subsequently, the membrane was blocked in 5% BSA at room temperature for 1 h and incubated at 4°C overnight with primary antibodies against CDK2(1:1000, ab235941), cyclinE1(1:2000, ab71535), p21 (1:1000, ab227443), MMP9 (1:1000, ab38898), MMP13 (1:3000, ab39012), Bcl-2 (1:2000, ab196495), Bax (1:1000, ab53154), cleaved caspase-3 (1µg/mL, ab2302), MRP1 (1:1000, ab233383), GST-π (1:3000, ab53943), ABCB1(1:1000, 13342S, Cell Signaling Technology). GAPDH was used as an internal control. After washing three times with PBST, the membrane was incubated with HRP-conjugated secondary antibodies (1:1000, Santa Cruz) for 2 h at room temperature. Finally, the protein bands on the membrane were visualized with Quantity One software (Bio-Rad Life Science, China) Image analysis were performed using Image J (NIH, USA) and GraphPad Prism 6 (GraphPad Software, USA).
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9

Western Blot Analysis of Cellular Proteins

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Western blot analysis was carried out using an established experimental method (31 (link)), adapted for use with the iBind Flex system (ThermoFisher Scientific) for primary and secondary antibody immunoblotting. For cell lysate collection, cells were seeded in 6-well plates, as described above. Rabbit monoclonal antibodies against human xCT (Novus Biologicals; NB300-318), NRF2 (Cell Signaling Technology; 12721), GLS1 (Abcam; ab156876), GCL (Abcam; ab190685; 1:1000 dilution), ABCC2 (Cell Signaling Technology; 12559), ABCC6 (Cell Signaling Technology; 10666), ABCB1 (Cell Signaling Technology; 13342) and ABCG2 (Cell Signaling Technology; 42078) were used for cell lysate analysis. Rabbit anti-human NRF2, GCL, p53 (Cell Signaling Technology; 2527), caspase3 Cell Signaling Technology; 9915) and cleaved-caspase3 antibodies (Cell Signaling Technology; 9915; 1:1000 dilution) were used for tumor lysate evaluation (prepared as described below). Actin was used as a loading control for all experiments (1:1000 dilution; Cell Signaling Technology; 4967), with an HRP linked anti-rabbit IgG secondary antibody (1:2000 dilution; Cell Signaling Technology; 7074S).
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10

Quantifying Protein Expression Levels

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Cells were lysed in Triton X-sample buffer and separated by SDS-PAGE. Proteins were detected using specific antibodies directed against β-actin (BioVision via BioCat GmbH, Heidelberg, Germany), ABCC1, ABCG2 (both from Santa Cruz Biotechnology, Heidelberg, Germany), ABCB1, XIAP, Mcl-1, CDK7, CDK9 (all from Cell Signaling via New England Biolabs, Frankfurt am Main, Germany), RNA polymerase II, Ser2-phosphorylated RNA polymerase II, Ser5-phosphorylated RNA polymerase II (all from Abcam, Cambridge, UK), and survivin (R&D Systems, Wiesbaden, Germany). Protein bands were visualized by enhanced chemiluminescence using a commercially available kit (Thermo Scientific, Schwerte, Germany).
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