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Ficoll hypaque

Manufactured by Lonza
Sourced in Belgium, Switzerland

Ficoll-Hypaque is a density gradient medium used for the separation and isolation of cells, proteins, and other biological molecules. It is a mixture of sucrose and sodium diatrizoate, which creates a density gradient that allows for the separation of different components based on their density. The core function of Ficoll-Hypaque is to provide a reliable and efficient method for the purification and enrichment of target analytes from complex biological samples.

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19 protocols using ficoll hypaque

1

Allergen Extraction and Flow Cytometry

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The Ags were commercially available antigen extracts, including D1 (Dermatophagoides pteronyssinus), G3 (Dactylis Glomerata), T9 (olea europea), and W6 (Artemisia vulgaris). They were purchased from Bial-Arístegui (Bilbao, Spain). Fluorescein isothiocyanate (FITC)-conjugated mouse monoclonal antibody (Ab) against human CD66b, and FITC-conjugated IgG isotype control were from Coulter-Izasa (Barcelona, Spain). Phycoerythrin (PE)-conjugated monoclonal Ab against human myeloperoxydase and PE-conjugated IgG isotype control were from Acris Antibodies (Hiddenhausen, Germany). Escherichia coli Lipopolysaccharide (LPS) was from Sigma-Aldrich (Madrid, Spain). Ficoll-Hypaque, Phosphate-buffered saline (PBS), RPMI 1640, fetal bovine serum, and Penicillin/Streptomycin were from Bio-Whittaker (Verviers, Belgium). All culture reagents used in this work (including Ags) had endotoxin levels of ≤0.01 ng/ml, as verified by the Coatest Limulus lysate assay (Chromogenix, Mölndal, Sweden).
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2

Isolation and Purification of Immune Cells

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Peripheral blood mononuclear cells (PBMCs) and BM mononuclear cells were obtained by Ficoll-Hypaque (Lonza Group, Basel, Switzerland) gradient separation of buffy coats of heparinized blood samples collected from healthy adult donors or MM patients, who provided informed consent according to institutional IRB regulations. CD14+ monocytes and CD3+ lymphocytes were then isolated by immunomagnetic separation with CD3 and CD14 microbeads (from either Miltenyi Biotech, Gladbach, Germany, or StemCell Technologies Inc, Vancouver, BC, Canada, or BD Bioscience, San Jose, CA, USA). Purity of the sample was assessed through flow cytometry and was >95% in all experiments. MM cell lines were cultured as described elsewhere.20 (link) CD11c+CD45+ DCs were sorted from BM mononuclear cells using BD FACSAria III cell sorter (BectonDickinson, Heidelberg, Germany).
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3

PBMC Isolation and Exosome Extraction

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A total of 36 HAM/TSP, 10 ND, and 2 HTLV-II patient PBMC samples were used for ex vivo incubation and later exosome isolation. PBMCs were isolated by Ficoll-Hypaque (Lonza, Walkersville, MD) centrifugation, and were cryopreserved in liquid nitrogen prior to use. All NDs were noted to be healthy and HTLV-1 negative. Briefly, PBMCs were placed in Exo-free CRPMI at 8 × 106 cells per well in a 12-well plate and incubated at 37 °C for 5 days. ND PBMCs were maintained in culture with the addition of 100 IU/mL recombinant human (rh) IL-2. Culture supernatant was collected and then spun at 1300 rpm for 10 min to remove cells. Spun supernatant was then pushed through a 0.22 μm MCE filter (EMD Millipore) to remove large debris, apoptotic bodies and extracellular vesicles > 220 nm. Cerebrospinal fluid (CSF) was obtained through lumbar puncture of study participants by neurologist and nurse practitioners of the Neuroimmunology Clinal group. CSF was spun at 1300 rpm for 10 min to remove cells and supernatant was stored in 1 mL aliquots at − 80 °C prior to use.
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4

Activation and Lysis of Primary T Cells

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Primary murine T cells (6×107) were labeled on ice for 25 min with 20 μg/ml biotin-conjugated anti-CD3ε (500A2), anti-CD4 (RM4-5) and anti-CD8a antibodies (53-6.7), washed with PBS with 2% FBS, incubated on ice for 25 minutes with 10 μg/ml FITC-streptavidin in the presence or absence of pervanadate as indicated, placed in a 37°C water bath for 2 minutes or for the indicated times, and immediately lysed in cold lysis buffer (50 mM Tris, pH 7.6, 150 mM NaCl, 5 mM EDTA, 1 mM EGTA, 1% Triton X-100) containing 100 μM PMSF, Complete™ protease inhibitors (Roche), 1 mM Na3VO4 and 25 mM N-ethylmaleimide (Sigma). A stock solution of 50 mM pervanadate was freshly prepared by mixing equal volumes of 100 mM H2O2 with 100 mM Na2VO4. For proteasomal inhibition, cells were pre-treated with 100 μM MG-132 (Boston Biochem, Inc.) for 1 hr at 37°C, then stimulated as described with MG-132 present during all the steps of the stimulation. Human peripheral blood mononuclear cells (PBMC) were isolated from peripheral blood of healthy volunteers by Ficoll-Hypaque (Lymphocyte Separation Medium 1.077, Lonza) gradient centrifugation. Peripheral blood T cells were isolated from PBMC by negative selection using Pan T cell Isolation Kit (Miltenyi Biotec). Primary human T cells (3.5×107) were stimulated as described above using biotin-conjugated CD3ε (UCHT1) antibody and FITC-streptavidin.
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5

Automated Viral RNA and PBMC RNA Extraction

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Automatic extraction of viral RNA from thawed plasma was done according to the manufacturer’s protocol using the QIAamp1 Viral RNA Mini-Kit (cat#1048147, QIAGEN1, Qiagen, Hilden, Germany). Separation of PBMCs from blood was done using Ficoll Hypaque (Lonza, Verviers, Belgium) according to the manufacturer’s instructions then lysed by lysis buffer provided in the kits, then automated extraction of the total RNA from lysed PBMCs was performed according to the manufacturer’s protocol using QIAamp1 RNA Blood Mini-Kits (cat#52304, QIAGEN1, Qiagen).
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6

HTLV-1-Immortalized CB T Cell Culture

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HTLV-1-immortalized CB T cells (CB-CD4/HTLV-1; Ozden et al., 2004 (link)) were cultured in RPMI supplemented with 10% fetal calf serum (FCS) and 50 U/ml IL-2 (Sigma). PBMCs from healthy donors, HTLV-1-infected AC, or HAM/TSP patients were purified by Ficoll-Paque TM PLUS (GE-Healthcare Bio-Science, Milan, Italy) from heparinated blood. PBMCs from healthy donors were obtained from the Blood Transfusion Center, Ospedale di Circolo, Fondazione Macchi, Varese, whereas PBMCs of AC and HAM/TSP patients were isolated by Ficoll-Hypaque (Lonza) centrifugation and cryopreserved in liquid nitrogen until use.
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7

Isolation and Activation of Human T Cells

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Research protocols for blood collection from healthy donors were approved by the University of Virginia Institutional Review Board (IRB Approved Protocol #18904). Informed consent was obtained from all normal donors. Peripheral blood mononuclear cells (PBMCs) were isolated from heparinized whole blood of normal healthy donors by Ficoll-Hypaque density gradient centrifugation and re-suspended in RPMI-1640 supplemented with 10% FCS, 1% l-glutamine (Lonza, Singapore), and 2% penicillin-streptomycin; T cells were activated with 20 ng of OKT3/ml and expanded in 100 IU of IL-2/million cells.
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8

Isolation and Cultivation of PBMCs

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Twenty mL of peripheral blood were obtained by venipuncture from the 20 selected patients of Group 2 patients and collected into sterile EDTA tubes. The PBMCs were immediately separated by density gradient centrifugation over Ficoll–Hypaque (Lonza, BioWhittaker) and then washed twice with RPMI 1640. Cell count and viability were determined utilizing Guava ViaCount Flex Reagent for Flow Cytometry (Merck Millipore, France). Viability was exceeding 95% in all studied cases. PBMCs were suspended in RPMI 1640 medium, supplemented with 2 mM l-glutamine, 25 mM HEPES, 100 U/mL benzyl-penicillin, 0.1 mg/mL streptomycin, and 10% ABserum (complete medium) (Lonza, BioWhittaker). All cultures were incubated.
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9

Isolation of Peripheral Blood Mononuclear Cells

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Under complete aseptic conditions (laminar flow work area), the blood was diluted 1: 1 with phosphate buffered saline (PBS) (Lonza, Walkersville, USA) without Ca2+ and Mg2+ (used in all following experiments). Peripheral blood mononuclear cells were isolated from buffy coats by Ficoll-Hypaque (Lonza) density-gradient centrifugation. The separated cells were washed twice in MACS buffer (Miltenyi Biotech, Germany). Then, cell pellets were suspended in 1 ml MACS buffer then counted and tested for viability.
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10

PBMC Isolation and Cryopreservation

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RPMI-1640 and Dulbecco’s PBS (DPBS) were obtained from GIBCO (Grand Island, NY); Ficoll-Hypaque, and penicillin-streptomycin solution from Bio-Whittaker (Walkersville, MD); dimethyl sulphoxide (DMSO); pooled human serum (PHS) from Invitrogen (Brown Deer, WI; Eugene, OR).
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