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10 protocols using dispase 1

1

Isolation and Analysis of Intestinal T-cells

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Mice were anesthetized via i.p. injections of ketamine-xylazine (ketamine, 100 mg/kg body weight; xylazine, 10 mg/kg body weight) and perfused with Hanks’ balanced salt solution (HBSS) containing EDTA for blood removal. The small intestines of the mice were longitudinally opened, washed with PBS, and shaken in HBSS containing 2 mM EDTA for 70 s. The intestines were shredded and shaken in RPMI 1640 containing 4% FBS, 0.2 mg/ml collagenase type 1 (Wako), 0.4 mg/ml dispase 1 (Wako), and 10 μg/ml DNase I (Nippon Gene, Japan) for 30 min at 37°C. Cells in the digested tissue were passed through a cell strainer, and single-cell suspensions were pretreated with brefeldin A (100 ng/ml) for 1 h. The cells were then stained with allophycocyanin-conjugated anti-mouse CD3ε (Becton, Dickinson [BD], NJ, USA), Brilliant Violet 421 (BV-421)-conjugated anti-mouse CD4 (BD), phycoerythrin (PE)-conjugated anti-mouse IL-17A (BD), PE-conjugated anti-mouse IL-17F (BD), and fluorescein isothiocyanate-conjugated anti-mouse CD4 (BD) antibodies. These cells were analyzed using a FACSVerse flow cytometer (BD).
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2

Propagation of HT-29 ρ0 Xenografts

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We first transplanted HT-29 ρ0n cells (1×107 cells) into 6-week-old BALB/c-nu/nu mice (Charles River Japan, Kanagawa, Japan). After 148 days, we transplanted 2 mm3 of cells from the HT-29 ρ0n–derived tumor directly into new BALB/c-nu/nu mice. A third transplantation was conducted after another 35 days. After a further 47 days, we enzymatically digested mouse fibroblasts using dispase 1 (Wako) and collagenase (Sigma), and isolated HT-29 ρ0x cells.
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3

Fatty Acid and RNAi Regulation Study

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DHA, arachidonic acid (AA; 20:4n-6), and linoleic acid (LA; 18:2n-6) were obtained from Cayman Chemicals and prepared as 100 mM stocks in ethanol. ON-TARGETplus siRNAs were purchased from Dharmacon. RNAiMAX was purchased from Invitrogen. The 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), collagenase (C6885), and type B bovine gelatin were purchased from Sigma-Aldrich (St. Louis, MO). GW501516 (GW1516) was purchased from R&D Systems (Minneapolis, MN). Dispase I was purchased from Wako Pure Chemicals and complete protease inhibitor cocktail was from Roche Applied Science.
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4

Isolation of Dermal Cell Suspension from Skin

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Subcutaneous fat was removed from the skin with a scalpel, and the whole skin was incubated in Hank’s balanced salt solution (HBSS; 1.25 mM CaCl2 and 0.81 mM MgSO4; Sigma) containing 10% CS and dispase I (25 U/ml, Wako) for 20 min at 37 °C. Dermal cell suspensions were obtained by scraping the skin gently and incubating in HBSS containing 10% CS, collagenase I (1.25 mg/ml, Life Technology), collagenase II (0.5 mg/ml, Millipore), collagenase IV (0.5 mg, Sigma), hyaluronidase (0.1 mg/ml, Sigma) and DNase I (50 U/ml, TaKaRa) for 30 min at 37 °C under gentle shaking. The cells were then filtered through 70-μm strainers, collected by centrifugation (300 × g, 5 min) and washed with HBSS containing 10% CS.
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5

Isolation of Primary Tail Tip Fibroblasts

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Primary TTFs were isolated from 12–16-week-old male C57BL/6 mice. Tail tips were washed in PBS, minced, and incubated in DMEM containing 1000 U/ml dispase I (Wako) and 2 mg/ml collagenase type 2 (Worthington) at 37 °C for 30 min. After digestion, an equal amount of DMEM containing 10% FBS and 1% PS was added, followed by gentle pipetting. The tissue/medium mixture was filtered through a 100 μm nylon Cell Strainer. The filtered cells were collected by centrifugation and resuspended in fresh DMEM supplemented with 10% FBS and 1% PS, and seeded in plastic dishes. Attached TTFs were used 4-5 days after incubation.
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6

3D Culture of Hepatocellular Carcinoma Cell Lines

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3D culture was performed as described previously with modification [26] (link), [27] (link). In brief, the stable cell lines (HepG2-Empty, LAP, and LIP) were seeded at 4,000 cells/well in a 96-well plate in 50 μl Matrigel (Corning, Corning, NY, USA). Following solidification, 500 μl of advanced DMEM/F12 (Thermo Fisher Scientific) supplemented with 1× Glutamax and 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (15 mM) was added and incubated at 37 °C for 2 weeks. The growth medium was replenished every other day. The 3D spheroids were recovered by digesting the Matrigel with DispaseI (1,000 PU/ml, Wako Pure Chemical Industries), fixed overnight in 4% paraformaldehyde (Wako Pure Chemical Industries), and then embedded in 2% bacto-agar and 2.5% gelatin and subjected to histologic analyses. Hematoxylin and eosin (H&E) staining was performed as described previously [28] (link). Data analysis was performed with NanoZumer Digital Pathology View 2 (Hamamatsu Photonics, Hamamatsu, Japan).
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7

Isolation and Culture of Rabbit Corneal Epithelial Cells

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Eyes of Japanese white rabbits were purchased from Funakoshi Corporation (Tokyo, Japan). Rabbit corneal epithelial cells were prepared and cultured according to a modified version of the previously reported method31 (link). In brief, limbal tissues were removed from the eyes, and the half-layers of endothelial side were then mechanically removed by surgical scissors. The remaining corneal tissues were transferred to minimum essential keratinocyte serum-free medium (KSFM; Life Technologies, California, USA) ([Ca2+] = 0.4 mM) containing dispase I (Wako Pure Chemical Industries, Osaka, Japan) at 250 PU/mL and then incubated at 4 °C for 24 hours and 37 °C for 1 hour. The corneal epithelial cells were then peeled and further incubated with TrypLETM select (Life Technologies, California, USA) at 4 °C for 30 minutes and 37 °C for 5 minutes to dissociate adhesion between the cells. The prepared rabbit CECs were suspended in serum-free CnT-20 medium (CELLnTEC, Santa Cruz, CA, USA) containing 1% Antibiotic-Antimyotic (Life Technologies Corporation, Carlsbad, CA USA) to isolate and grow CECs and then plated in collagen-coated tissue culture plates (AGC Techno Grass Co., Ltd., Shizuoka, Japan). The rabbit CECs were then cultured at 37 °C with 5% CO2, and the medium was replaced with fresh medium every 48 hours until the cells reached subconfluence.
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8

Isolation and Culture of Rabbit Corneal Epithelial Cells

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Japanese white rabbit eyes were purchased from Funakoshi Corporation (Tokyo, Japan). Rabbit corneal epithelial cells were prepared and cultured according to a previously reported method35 (link). Briefly, the corneas were removed from the eyes, and the half-layers of the endothelial side were then mechanically removed by use of surgical scissors. The remaining corneal tissues were transferred to a minimum essential keratinocyte serum-free medium (Life Technologies, Carlsbad, CA) containing dispase I (Wako Pure Chemical Industries, Osaka, Japan). The tissues were then incubated at 4 °C for 24 hours and at 37 °C for 1 hour. The resultant corneal epithelium was then peeled and further incubated with TrypLETM Select (Life Technologies) trypsin replacement enzyme at 4 °C for 30 minutes and at 37 °C for 5 minutes to dissociate the cells. The prepared rabbit CECs were suspended in CnT-20 medium (CELLnTEC, Santa Cruz, CA) and plated in collagen-coated tissue culture plates (AGC Techno Glass Co., Ltd., Shizuoka, Japan).
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9

Organoid Growth Quantification Protocol

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Conventional organoids and cyst-enriched organoids were dissociated into single cells in the same way as the monolayer culture. These cells were embedded with Matrigel and cultured in expansion medium supplemented with 10 μM Y-27632 for 4 days. Organoid growth was measured using CellTiter-Glo® 3D Cell Viability Assay (Promega) after solubilizing Matrigel with dispase (Dispase I, FUJIFILM Wako Pure Chemical). For the Imaging analysis was performed with cellSens (OLYMPUS) according the manufacturer. The formation of an organoid was defined to be when the major axis of its structure was measured to be over 100 μm in the bright-field image.
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10

Amnion-Derived Mesenchymal Stem Cells

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The Medical Ethical Committee of Hokkaido University Graduate School of Medicine, Sapporo, Japan approved this examination, and all pregnant women gave written informed consent. The human fetal membrane was obtained during caesarean deliveries, and the amnion was separated from the chorion by peeling. AMSCs were isolated and expanded by digestion with collagenase (Nippi, Tokyo, Japan) and dispase I (Wako Pure Chemical Industries, Osaka, Japan), followed by seeding in uncoated plastic dishes with minimal essential medium (MEM) α (DS Pharma Biomedical, Osaka, Japan) supplemented with 10 fetal bovine serum (Moregate Biotech, Bulimba, Australia) and 40 µg/ml of gentamicin (MSD, Tokyo, Japan). The culture was maintained at 37°C in a humidified atmosphere of 95% air and 5% CO 2 . After 3-4 days in culture, the non-adherent cells were removed and the adherent cells were maintained in culture until they reached 80% confluence. The passage was performed using 1 mM of ethylenediaminetetraacetic acid (Invitrogen, Carlsbad, California, USA) and 0.1 mg/ml of trypsin (Roche Diagnostics, Basel, Switzerland).
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