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6 protocols using tapi 1

1

Modulation of P2Y11 Receptor Activity

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The slowly hydrolyzable ATP analog ATPγS [7 (link), 20 (link)] (Sigma Aldrich, St. Louis, MO, USA) as well as the suramin analog NF340 [7 (link), 10 (link), 13 (link), 21 (link)] (Santa Cruz, Dallas, TX, USA) served as P2Y11 receptor agonist (20 µM) and antagonist (20 µM), respectively. Further reagents utilized in this study include the PDE4-selective inhibitor rolipram (10 µM) (Sigma-Aldrich), BAPTA-AM (10 µM) (Sigma-Aldrich), calphostin C (250 nM) (Tocris), recombinant IL-1α and IL-1β (0.5–2 ng·ml−1) (R&D Systems, Minneapolis, MN, USA), the TACE/ADAM17 inhibitor TAPI-1 (20 µM) (Tocris), the selective inhibitor of Epac1 (R)-CE3F4 (20 µM) (Tocris), and the humanized anti-VEGF monoclonal antibody bevacizumab (0.5 µg ml−1) (Selleckchem, Houston, TX, USA).
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2

ADAM10 and ADAM17 Inhibitor Assay

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For ADAM10 and ADAM17 inhibitor studies, 5.0 × 105 cells were seeded in 1 mL of DMEM without supplements per well of a 24‐well plate dish. Cells were treated with indicated concentrations of phorbol 12‐myristate 13‐acetate (PMA; Sigma‐Aldrich, Steinheim, Germany) diluted in equal volumes of DMSO (Sigma‐Aldrich) 30 min prior to treatment with 2 µm of ADAM10 inhibitor GI254023X (Sigma‐Aldrich) or 5 µm of ADAM17 inhibitor TAPI‐1 (Tocris, Minneapolis, MN, USA). DMSO‐treated cells served as negative controls. After 48 h of incubation, cell culture supernatant was collected and centrifuged at 10 000 g for 10 min at 4 °C. Equal volumes of cell‐free supernatant were analyzed with regard to soluble L1CAM by western blot analysis as described in previously.
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3

Cytotoxicity Assay for NK and ADCC

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Single cell suspensions of liver and spleen tissue were cocultured with K562 or Raji cells at a ratio of 10:1 in RPMI 1640 (GIBCO, Thermo Fisher Scientific) with 10% FCS in a humidified incubator at 37°C and 5% CO2. Culture medium contained FITC-labeled mouse anti-human CD107a (clone H4A3, BD Bioscience) antibody and monensin was added after 1 hour of coculture. For the ADCC assay, Raji cells were incubated with Rituximab (MabThera, Roche) at a concentration of μg/ml for 10min at 37°C prior to the addition of effector cells. For the stimulation with IL-12 (20ng/ml, Biolegend) and IL-18 (10ng/ml, Biolegend), the culture medium was supplemented with metalloproteinase inhibitor TAPI-1 (5 μg/ml, Tocris), and monensin and Brefeldin A was added after 1 hour of stimulation. After a total of 5 hours, cells were washed, stained, and analyzed on a BD LSR II Fortessa or BD FACSymphony A5 flow cytometers as described above.
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4

NK Cell Degranulation Assay Protocol

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For degranulation assays, preactivated human NK cells were cocultured with human melanoma cells at an effector to target cell ratio of 1:1 in complete RPMI 1640 containing PE-labeled anti-human CD107a antibody (H4A3, BioLegend) in a humidified incubator at 37°C and 5% CO2. For KIR-matched assays, culture medium was supplemented with the metalloproteinase inhibitor TAPI-1 (5 μg/ml; Tocris) to prevent shedding of the CD16 molecule following NK cell activation. Brefeldin A (5 μg/ml; Sigma-Aldrich) and monensin (2 μM; Thermo Fisher Scientific) were added after 1 hour of incubation. After a total of 5 hours of incubation, cells were washed, stained, and analyzed on a BD FACSymphony A5 flow cytometer. UMAP algorithm (81 ) visualization was performed using FlowJo software (version 10, TreeStar Inc.). Data were pregated on live, CD45+ cell populations, downsampled to 27,000 cells per condition using the DownSample (v3.3) plugin, and subsequently concatenated per donor. The UMAP plugin (v3.1) for FlowJo was used with the following parameters for dimensionality reduction: “Euclidean,” nearest neighbors: 50; minimum distance: 0.25; number of components: 2.
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5

Cytotoxicity Assay for NK and ADCC

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Single cell suspensions of liver and spleen tissue were cocultured with K562 or Raji cells at a ratio of 10:1 in RPMI 1640 (GIBCO, Thermo Fisher Scientific) with 10% FCS in a humidified incubator at 37°C and 5% CO2. Culture medium contained FITC-labeled mouse anti-human CD107a (clone H4A3, BD Bioscience) antibody and monensin was added after 1 hour of coculture. For the ADCC assay, Raji cells were incubated with Rituximab (MabThera, Roche) at a concentration of μg/ml for 10min at 37°C prior to the addition of effector cells. For the stimulation with IL-12 (20ng/ml, Biolegend) and IL-18 (10ng/ml, Biolegend), the culture medium was supplemented with metalloproteinase inhibitor TAPI-1 (5 μg/ml, Tocris), and monensin and Brefeldin A was added after 1 hour of stimulation. After a total of 5 hours, cells were washed, stained, and analyzed on a BD LSR II Fortessa or BD FACSymphony A5 flow cytometers as described above.
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6

Histamine Receptor Agonists and EGFR Signaling

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Histamine and the specific histamine receptor agonists 2-([3-trifluoromethyl]-phenyl histamine dimaleate (H1R agonist), amthamine dihydrobromide (H2R agonist), and (R)α-methylhistamine dihydrochloride (H3R agonist) were from Sigma-Aldrich Corp. (St. Louis, MO, USA). The receptor agonist 4-methylhistamine dihydrochloride (H4) and TAPI-1 (ADAM17 inhibitor) were from Tocris Bioscience (Ellisville, MO, USA). EGF was from Sigma-Aldrich, and Amplex Red and fura-2-acetoxymethyl ester (fura-2/AM) were purchased from Invitrogen (Grand Island, NY, USA). An EGFR antagonist was from LC Laboratories (Tyrphostin AG 1478; Woburn, MA, USA). Antibodies directed against the EGFR, phosphorylated EGFR (Tyr1068), AKT, phosphorylated AKT, and Western blotting application solution kits were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against ERK and phosphorylated ERK and small interfering RNA (siRNA) transfection medium were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Transfection reagent, rat EGFR siRNA–SMART pool, and nontargeting pool were from Dharmacon RNAi Technology (DharmaFECT1, ON-TARGETplus, ON-TARGETplus, respectively; Lafayette, CO, USA).
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