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Optima lc ms grade acn

Manufactured by Thermo Fisher Scientific
Sourced in United States, Italy

Optima LC/MS Grade ACN is a high-purity acetonitrile (ACN) solvent specifically designed for use in liquid chromatography-mass spectrometry (LC/MS) applications. It is produced to meet the stringent requirements of LC/MS analysis, ensuring low levels of impurities and high chromatographic performance.

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6 protocols using optima lc ms grade acn

1

Peptide Digestion and LC-MS Analysis

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Optima LC/MS Grade water (Fisher
catalog no. W6-4), Optima LC/MS Grade ACN (Fisher catalog no. A955-4),
1 M Tris-HCl, pH 8.0 (Fisher catalog no. BP1758-100), 1 M Tris-HCl,
pH 7.5 (Fisher catalog no. BP1757-100), Pierce Standard LC/MS Grade
BSA Protein Digest (Thermo Scientific catalog no. 88341), and Pierce
Standard HeLa Protein Digest (Thermo Scientific catalog no. 88329)
came from Thermo Fisher Scientific. Formic acid (Fluka catalog no.
94318-50ML) was obtained from Fluka. Dithiothreitol (Bio-Rad catalog
no. 161-0611), urea (Bio-Rad catalog no. 161-0730), and iodoacetamide
(Bio-Rad catalog no. 163-2109) were purchased from Bio-Rad. Zwittergent
3-16 detergent (Calbiochem catalog no. 693023) was obtained from Calbiochem.
Calcium chloride, Technical Grade (Sigma catalog no. 222313-25G),
came from Sigma. Trypsin GOLD, MS Grade (Promega catalog no. V528A),
was purchased from Promega. Vivacon-500, 30 kDa MWCO filters (Sartorius
catalog no. VN01H22ETO) came from Sartorius.
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2

Isotopic Reagents for Quantitative Proteomics

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Isotopic reagents for label synthesis including leucines (L-leucine, L-leucine-1-13C, 15N, and L-leucine-1-13C), heavy formaldehydes (CD2O and 13CD2O), sodium cyanoborodeuteride (NaBD3CN), 97% 18O water (H218O) and deuterium water (D2O) were obtained from ISOTEC Inc. (Miamisburg, OH). Sodium cyanoborohydride (NaBH3CN), formaldehyde (CH2O), hydrogen chloride gas (HCl), iodoacetamide (IAA), tris hydrochloride, reagent-grade formic acid (FA), triethylammonium bicarbonate (TEAB), N,N-dimethylformamide (DMF), 4-(4, 6-dimethoxy-1, 3, 5-triazin-2-yl)-4-methylmorpholinium tetrafluoroborate (DMTMM), N-methylmorpholine (NMM), and bovine serum albumin (BSA) were purchased from Sigma-Aldrich (St. Louis, MO). Neuropeptide standard allatostatin I (AST-I, GDGRLYAFGL-NH2) was purchased from American Peptide Company (Sunnyvale, CA). Sequencing grade trypsin was acquired from Promega (Madison, WI). Urea, ammonium bicarbonate, ACS grade methanol (MeOH), dichloromethane (DCM, CH2Cl2), and acetonitrile (ACN, C2H3N) were purchased along with Optima LC/MS grade ACN, water, and formic acid from Fisher Scientific (Pittsburgh, PA). The 8-plex iTRAQ reagents were provided by AB SCIEX (Foster City, CA) while TMT0 was provided by Thermo Pierce (Rockford, IL).
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3

Detailed Reagents and Materials for Protein Analysis

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Chemicals were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA), unless stated otherwise. Carbo-free blocking solution was purchased from Vector Laboratory (Burlingame, CA, USA). SuperSignal West Pico Chemiluminescent Substrate was purchased from Thermo Scientific (Rockford, IL, USA). Precast gel (4–20%) and Precision Plus Protein Standard Kaleidoscope Pre-stained protein markers were purchased from Bio-Rad (Hercules, CA, USA). Percoll was purchased from Pharmacia (Piscataway, NJ, USA). NP-40 was purchased from Calbiochem EMD Millipore (Billerica, MA, USA). SimplyBlue SafeStain was purchased from Life Technologies (Carlsbad, CA, USA). The BCA assay kit was purchased from Thermo Scientific. Biotinylated glycans were obtained from Lectinity (Moscow, Russia). ACS grade methanol (MeOH), ACS grade acetonitrile (ACN), Optima LC-MS grade ACN, Optima LC-MS grade water and ammonium bicarbonate were purchased from Fisher Scientific (Pittsburgh, PA, USA). Deionized water (18.2 MΩ cm) was prepared with a Milli-Q Millipore system. Formic acid (≥98%) was obtained from Fluka (Buchs, Switzerland). DL-Dithiothreitol (DTT), Protease-Max surfactant and sequencing-grade modified trypsin were purchased from Promega (Madison, WI, USA). Recombinant lactadherin protein was purchased from R&D Systems (Minneapolis, MN, USA; product 2805-MF/CF).
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4

Optimized Capillary Electrophoresis Setup

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All electrolyte solutions contained Optima™ LC/MS Grade water (Thermo Scientific PN W6500) and or Optima™ LC/MS Grade ACN (Fisher Chemical PN A955) solvents. Anolyte was an aqueous solution of 1% formic acid (ACROS Organics™ PN 27048). Catholyte was an aqueous solution of 1% diethylamine >99.5% Reagent Grade (Sigma Aldrich PN 47216) and the mobilizer was a 1% formic acid, 50% ACN, and 49% water.
A 500 mM cathodic spacer solution containing Free Base l‐Arginine ≥ 99.5% (Arg) (Sigma Aldrich PN 11009–100G‐F) was prepared by dissolving 0.870 mg of Arg powder into 10 mL of Optima™ LC/MS Grade water. A 200 mM anodic spacer solution containing Free Acid Iminodiacetic Acid 98% (IDA) (Sigma Aldrich PN 220000–500G) was prepared by dissolving 0.270 mg of IDA powder into 10 mL of Optima™ LC/MS Grade water. Spacer solutions were stored at room temperature.
Peptide amino acid sequences initially reported by Shimura were synthesized and individually dissolved in LC/MS grade water at 5 mg/mL to act as internal pI markers 19.
Prior to desalting, lyophilized mAb material was reconstituted with MS grade water. All mAb samples were desalted with a 0.5 mL Zeba™ 7K MWCO spin desalting column (Thermo Fisher Scientific PN 89882).
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5

Palbociclib Glucuronidation and Sulfation Assay

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ABT (Sigma‐Aldrich), palbociclib sulfate (TRC), uridine 5′‐diphosphoglucuronic acid, UDPGA (Sigma‐Aldrich), MgCl2 (Sigma‐Aldrich), Alamethicin (Sigma‐Aldrich), dimethyl sulfoxide, DMSO (Sigma‐Aldrich), ACN (liquid chromatography‐mass spectrometry [LC–MS] grade; Fisher Chemical), ACN (Optima LC/MS grade, Fisher Chemical) formic acid (Fisher Chemical), potassium phosphate (Sigma‐Aldrich) 5,5‐diethyl‐1,3‐diphenyl‐2‐iminobarbituric acid (“39:an”; Sigma‐Aldrich), D‐Saccharolactone (Sigma‐Aldrich), ultra‐pure water (Millipore), recombinant UGT supersomes (UGT1A1, UGT1A3, UGT1A4, UGT1A6, UGT1A9, UGT2B7, and UGT2B15; Corning), β‐estradiol (Sigma‐Aldrich), chenodeoxycholic acid (CDCA; Sigma‐Aldrich), trifluoperazine (TFP; Sigma‐Aldrich), serotonin (Sigma‐Aldrich), propofol (Sigma‐Aldrich), zidovudine (Sigma‐Aldrich), oxazepam (Sigma‐Aldrich), raloxifene (Sigma‐Aldrich), dehydroepiandrosterone (DHEA; Sigma‐Aldrich), DHEA‐sulfate (Sigma‐Aldrich), 4‐methylumbelliferone (4‐MU; Sigma‐Aldrich), palbociclib sulfate (Toronto Research Chemicals); recombinant sulfotransferases (SULT1A1, SULT1A3, SULT1B1, SULT1C2, SULT1C4, SULT1E1, SULT2A1, and SULT2B1; R&D Systems), palbociclib, and ARV‐471 were synthesized by AZ chemistry.
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6

Chemical Reagents Purification Protocol

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All chemicals were of the highest purity commercially available and used without further purification. KCl, K2HPO4, acetic acid and Tris-HCl were purchased from Carlo Erba (Milan, Italy). Formic Acid (FA), Protease Inhibitor Cocktail, EDTA, ammonium bicarbonate, dithiothreitol (DTT) and iodoacetamide (IAA) were obtained from Aldrich (St. Louis. MI, USA). Modified porcine trypsin was purchased from Promega (Madison, WI, USA). Water and acetonitrile (ACN) (OPTIMA® LC/MS grade) for LC/MS analyses were purchased from Fisher Scientific (Milan, Italy).
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