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8 protocols using biotinylated donkey anti rabbit igg

1

Immunohistochemical Analysis of Intestinal Markers

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Tissue sections were immunostained as previously described [28 (link)]. Primary antibodies included rabbit anti-Ki67 (Thermo Fisher Scientific, Inc., Fremont, CA; Cat. No. RM-9106-S1) (1:200), mouse anti-BrdU (Thermo; Cat. No. MS-1058-PO) (1:250), goat anti-cryptdin related sequence 4C (CRS4C) (gift from Dr. A. J. Ouellette, University of Southern California, Los Angeles, CA) [32 (link)] (1:2000), and rabbit anti-MUC2 (Santa Cruz Biotechnology, Inc, Santa Cruz, CA; Cat. No. sc15334) (1:100). Secondary antibodies included biotinylated donkey anti-rabbit IgG, donkey anti-goat IgG, and donkey anti-mouse IgG (all from Vector Labs, Burlingame, CA). Biotinylated antibodies were linked to avidin-horseradish peroxidase conjugates (Vector Labs), visualized using 3,3′-diamino benzidine (Sigma) for 2 to 5 min, and lightly counterstained with hematoxylin.
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2

Dexmedetomidine Pharmacological Protocol

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Dexmedetomidine was obtained from the Jiangsu HengRui Pharmaceutical Co. Ltd. (Jiangsu, China). Rabbit polyclonal anti-c-Fos antibody was purchased from Abcam (Cambridge, MA, United States). Biotinylated donkey anti-rabbit IgG and avidin-biotin-peroxidase were purchased from Vector Laboratories (Burlingame, CA, United States). Finally, 3, 3-diaminobenzidine-tetra-hydrochloride (DAB) was purchased from Sigma-Aldrich (St. Louis, MO, United States). Dexmedetomidine was dissolved in sterile saline before use.
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3

Immunohistochemical Analysis of Tracheal Development

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Animals were dissected in PBS and fixed for 30 min with 4% (wt/vol) Paraformaldehyde in PBS. The following antisera were used for Immunohistochemical analysis: Chicken anti-GFP (Aves, 1:500), Rabbit anti-phospho Chk1 (CST, 1:200), Rabbit anti-phospho Smad (CST, 1:150) Rabbit anti-pH3 (Millipore, 1:500), and Alexa 488/568/647-conjugated Donkey anti-Chicken/Rabbit/Mouse secondary antibodies (Invitrogen, 1:200). Tyramide signal amplification was used as per manufacturer recommendations for p-Chk1 detection. The following reagents were used as part of this protocol: Tyramide amplification buffer and Tyramide reagent (Thermofisher), Vectastain A and B and Biotinylated donkey anti Rabbit IgG (1:200, Vector Labs). Tracheal preparations were flat-mounted in ProLong Diamond Antifade Mountant with DAPI (Molecular Probes) and imaged on Zeiss LSM-780 laser-scanning confocal microscopes. Images were processed using Image J. For quantification of cell number, fixed specimens were mounted in ProLong Diamond Antifade Mountant with DAPI and the number of nuclei were counted on an Olympus BX 53 microscope. The DT of the second thoracic metamere was identified morphologically based on the cuticular banding pattern at anterior and posterior junctions.
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4

Intestinal cell proliferation analysis

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The ileal tissues were immunostained using a rabbit anti-Ki67 (Thermo Fisher Scientific, Waltham, MA, Cat. No. RM- 9106-S1) antibody followed by a biotinylated donkey anti-rabbit IgG, (Vector Labs, Burlingame, CA) and then by avidin-horseradish peroxidase conjugates (Vector Labs). Positive cells were visualized after incubation with 3,3′-diaminobenzidine (Sigma-Aldrich) for 2 to 5 min and counterstained with hematoxylin. The total number of Ki67 positive cells was determined for each villous-crypt axis. Only well-oriented crypts with the epithelial layer on at least one side continuous with the villous epithelial layer were counted.
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5

Immunostaining of c-Fos in Neuronal Nuclei

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Immunostaining for c-Fos protein in neuronal nuclei was performed as described previously (Mitchell et al., 2018 (link); Stocker et al., 2004 ; Stocker et al., 2006 (link)). Tissue sections through the PVN were removed from cryoprotectant and rinsed in 0.01 M PBS prior to incubation in 0.5% sodium borohydride for 30 min then in PBS containing 3% donkey serum and 0.3% Triton-X 100 for 2 h. Sections were then incubated with a polyclonal rabbit anti-rat cFos antibody (1:10,000; Millipore) at 4°C for 72 h followed by incubation with biotinylated donkey anti-rabbit IgG (1:250; Vector Laboratories) for 2 h at room temperature. Sections were rinsed and incubated for 10 min with streptavidin-Alexa Fluor 594 (1:250; Invitrogen).
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6

Intestinal cell proliferation analysis

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The ileal tissues were immunostained using a rabbit anti-Ki67 (Thermo Fisher Scientific, Waltham, MA, Cat. No. RM- 9106-S1) antibody followed by a biotinylated donkey anti-rabbit IgG, (Vector Labs, Burlingame, CA) and then by avidin-horseradish peroxidase conjugates (Vector Labs). Positive cells were visualized after incubation with 3,3′-diaminobenzidine (Sigma-Aldrich) for 2 to 5 min and counterstained with hematoxylin. The total number of Ki67 positive cells was determined for each villous-crypt axis. Only well-oriented crypts with the epithelial layer on at least one side continuous with the villous epithelial layer were counted.
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7

Immunoperoxidase Staining of Brainstem Markers

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For single immunoperoxidase staining for either CTB, ChAT or CSPG selected brainstem sections were processed free-floating with polyclonal goat antibodies directed against either CTB (1:20,000; List) or ChAT (1:100; Chemicon) or with rabbit anti-CSPG (1:5000; Biogenesis) for 48 h at 4°C. All markers were visualized by binding of biotinylated donkey-anti-goat IgG (1:200; Vector Lab) or biotinylated donkey anti-rabbit IgG (1:200; Vector Lab) followed by extravidin-peroxidase (1:1000; Sigma) and diaminobenzidine (DAB) as chromogen to yield a brown color.
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8

Immunohistochemical Analysis of Intestinal Cell Proliferation

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Ileal tissues were immunostained using a rabbit anti-Ki67 (Thermo Fisher Scientific, Waltham, MA, USA; RM-9106-S1) antibody followed by a biotinylated donkey anti-rabbit IgG (Vector Laboratories, Burlingame, CA, USA) and then by avidin-horseradish peroxidase conjugates (Vector Laboratories). Positive cells were visualized after incubation with 3,3′-diaminobenzidine (Sigma-Aldrich) for 2-5 min and counterstained with Hematoxylin. The total number of Ki67-positive cells was determined for 100 crypts each slide.
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