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Exobacteria omv isolation kit

Manufactured by System Biosciences
Sourced in United States, Canada

The ExoBacteriaTM OMV Isolation Kit is a tool designed to isolate outer membrane vesicles (OMVs) from bacterial cultures. OMVs are nano-sized, membrane-bound structures that are naturally released by bacteria and play important roles in bacterial physiology and pathogenesis. The kit provides a streamlined process for the isolation and purification of OMVs from bacterial samples.

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7 protocols using exobacteria omv isolation kit

1

Isolation and Characterization of OMVs and Exosomes

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E. coli O6:K2:H1 (ATCC, Manassas, VA, USA) were cultured overnight in Luria-Bertani medium at 37  °C rotator with speed 180 rpm until the desired OD600 was reached. The cultured E. coli were then pelleted and filtered as previously described [22 (link)], followed by OMV purification using ExoBacteria OMV Isolation Kits (SBI, Palo Alto, CA, USA), based on the manufacturer’s protocol. The protein content in the isolated OMVs was measured using Bradford assays with Coomassie Protein Assay Reagent (Thermo Fisher Scientific, Waltham, MA, USA). Exosomes were isolated from the bronchoalveolar lavage fluid (BALF) of WT mice. To obtain BALF, a total of 2 mL of PBS was used for the collection, as previously described [23 (link)]. BALF was centrifuged at 300× g for 10 min to remove floating cells, followed by 2000× g for 20 min to separate apoptotic bodies, and 16,000× g for 40 min to separate microvesicles [24 (link)]. The resulting supernatants were then ultracentrifuged at 100,000× g for 1 h to obtain exosomes [24 (link)]. TEM images of OMVs were generated at the Experimental Pathology Laboratory Core, Boston University School of Medicine.
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2

Isolation and Purification of Bacterial Outer Membrane Vesicles

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Bacteria cells (E. coli) were cultured overnight in LB broth at 37 °C with shaking (180 rpm) until the desired OD was reached. The cultured cells were pelleted twice at 5,000 x g for 20 min at 4 °C. The supernatant was filtered through a 0.45 μm pore size filter. This supernatant was then further filtered through a 0.22 μm pore size filter to remove any bacteria or cell debris. The OMVs were purified from the filtered supernatant using ExoBacteria OMV Isolation Kits (SBI, Palo Alto, CA) according to the manufacturer's protocol. Bradford assay (Bio-Rad, Hercules, CA) was used to determine protein content of isolated OMVs. The sample was aliquoted and stored at −80 °C until use.
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3

Outer Membrane Vesicle Isolation and Characterization

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OMV were prepared from by filtering overnight cultures through a 0.2 µm-pore filter and passing the supernatants through 10 kDa centrifugal concentrators (Thermo Fisher Scientific) followed by the ExoBacteria™ OMV Isolation Kit (System Biosciences). The purity of OMV samples was ascertained by transmission electron microscopy (TEM), and their protein content was measured spectrophotometrically based on the Bradford method (Zingl et al., 2020 (link)). In the adhesion and invasion assays, Caco-2 cells and the wild-type C. jejuni strain (MOI = 100) were co-incubated with OMVs (10 μg). The level of IL-8 secretion in T84 cells after co-incubation with 100 μg OMVs was assessed using ELISA.
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4

Quantitative Proteomic Profiling of OMVs

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OMVs were purified using the ExoBacteria™ OMV Isolation Kit (System Biosciences, Palo Alto, CA, USA) following the manufacturer’s protocols. The proteomic analysis was carried out by the proteomics company Bioproximity (Manassas, VA, USA). Briefly, the protocol accessed was label-free, quantitative, shotgun proteomic profiling of affinity purified samples (LFQ Profiling, in-Solution-Top 500). Protein identification and quantitation of up to the 500 most abundant protein groups in the sample were carried out via UPLC-MS/MS on Q-Exactive Orbitrap HF-X. Unbiased, data-dependent acquisition was performed, inclusive of sample preparation via digestion, sequence library searching, spectral library matching, match-between-runs assignment, relative quantitation and reporting.
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5

Isolation of Bacterial Extracellular Vesicles

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L. acidophilus (KCTC 3164), L. fructosus (KCTC 3544), L. plantarum (KCTC 3107), and L. paracasei subsp. tolerans (ATCC 25599) cells were cultured in BD DifcoTM Lactobacilli MRS broth (Thermo Fisher Scientific, Waltham, MA, USA) at 37 °C with shaking at 230 rpm to an optical density at 600 nm (OD600) of 1.5. The bacterial cultures were pelleted at 4000× g for 30 min at 4 °C. The cell-free supernatants were collected and filtered using a 0.22 μm Syringe Filter (Biofact, Daejeon, Korea). EVs from the supernatants were isolated using the ExoBacteriaTM OMV Isolation Kit (System Biosciences, Palo Alto, CA, USA) according to the manufacturer’s instructions, and the final product was resuspended in PBS buffer. EVs were stored at 4 °C until use.
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6

Isolation and Characterization of P. salmonis OMVs

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30 mL of a minimal liquid medium (MLM) supplemented with 3.18 mM cysteine, 2 mM GlutaMAX™ (Invitrogen), and 0.05 mM ferric chloride was inoculated with 1 mL of logarithmic phase P. salmonis culture (equivalent to 1 x 109 bacteria) in AUSTRAL-SRS broth. The culture was incubated for 8 days at 18 °C at 50 rpm until the early stationary phase. OMVs were isolated from the culture supernatant of each strain as described by Oliver et al. (31 (link)) with some modifications. Briefly, bacterial cells were isolated via two consecutive rounds of low-speed centrifugation at 5000 x g for 10 min at 4°C. The bacterial supernatant containing extracellular products was filtered with 0.45 and 0.22 μm/pore-filters to remove residual cells. Finally, OMVs were isolated using an ExoBacteriaTM OMV isolation kit (System Biosciences) according to the manufacturer’s instructions and stored at -80°C until use. The purity of isolated OMVs was confirmed by electron microscopy.
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7

Isolation of EVs from Bacterial Strains

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EVs from cultures of the ATCC 19606 (TIG-S AB) and TIG-R AB strains were isolated using the column-based ExoBacteriaTM OMV Isolation Kit (System Biosciences, Palo Alto, CA, USA), and the final captured EVs on the column were provided with elution buffer in the kit according to the manufacturer’s instructions. EVs were stored at 4 °C before their use.
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