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8 protocols using ldn 193189

1

Screening Stem Cell Signaling Modulators

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A screening of small molecules from the MedChemExpress stem cell signaling library (catalogue No. HY-LO17) was performed using a basic cocktail containing forskolin (5 μM), (MedChemExpress, Monmouth Junction, NJ, USA), CHIR99021 (2 μM), (MedChemExpress, Monmouth Junction, NJ, USA), RepSox (2 μM) (MedChemExpress Monmouth Junction, NJ, USA), and LDN193189 (0.5 μM), (MedChemExpress, Monmouth Junction, NJ, USA) in Dulbecco’s modified Eagle medium: F12 (DMEM: F12) (Gibco, Thermo Fisher Scientific, Inc., Waltham, MA, USA) containing N2 (Invitrogen, Thermo Fisher Scientific, Inc., Waltham, MA, USA) as the only supplement. Each of the small molecules from the library was added to the basic cocktail at a final concentration of 5 μM and investigated for its ability to generate a neuronal-like morphology and Tuj1+ cells.
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2

Directed Differentiation of Stem Cells

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Cells were treated with iMEM with 1% P/S, 0.5 × B27, 1% Pluronic® F-68, 0.25 μM SANT-1 (Merck), 50 nM retinoic acid (Merck), 10 μM ALK5 inhibitor II (Santa Cruz Biotechnology), 100 nM LDN-193189 (MedChemExpress), 1 μM L-3,3ʹ,5-triiodothyronine (T3, Merck Millipore), 50 ng/ml basic fibroblast growth factor (bFGF, PeproTech), 1 μM XAV939 (Merck Millipore), and 10 μM Y-27632 for 2 days.
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3

TS603 Intracranial Tumor Model in Mice

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Following the protocols as described before, six-week-old BALB/c-nu mice were injected with 5 × 105 TS603 cells localizing to the caudate nucleus of mice brain [17] (link). One week after injection, mice were randomly divided into two groups. The treatment group mice (LDN, n = 9) were intraperitoneally injected with LDN-193189 (3 mg/kg, MedChem Express) every day, and the control group mice (Ctrl, n = 9) were injected with DMSO. Animal studies were carried out in accordance with the NIH Guide for the Care and Use of Laboratory Animals.
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4

Directed Differentiation of Stem Cells

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Cells were cultured in iMEM with 1% P/S, 0.5× B27, 1% Pluronic® F-68, 0.25 μM SANT-1 (Merck Millipore), 50 nM retinoic acid (Merck Millipore), 10 μM ALK5 inhibitor II (ALK5iII, Santa Cruz) or the alternative candidates, 100 nM LDN-193189 (MedChemExpress, Monmouth Junction, NJ, USA), 1 μM L-3,3′,5-triiodothyronine (T3, Merck Millipore), 50 ng/mL basic fibroblast growth factor (bFGF, PeproTech), 1 μM XAV939 (Merck Millipore), and 10 μM Y-27632 for 2 days.
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5

Generating Neural Inducible Stem Cells

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Neural induced differentiation Media (NGD) and neural induction medium (NIM) were prepared according to previous reports [43 (link), 44 (link)]. Compound C (Medchem Express LLC, Monmouth, UK, 2.5 μM), FGF2 (Sino Biological Inc., Beijing, China, 20 ng/mL), EGF (Sino Biological Inc., 20 ng/mL), SB431542 (Medchem Express LLC., 10 μM), DMH-1 (Medchem Express LLC., 2 μM), LIF (Sino Biological Inc., 10 ng/mL), LDN193189 (Medchem Express LLC., 0.25 μM) and insulin (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China, 10 ng/mL) were added to medium as described previously [6 , 43 (link)–48 (link)]. iPSCsTLX were seeded onto a matrigel-coated 6-well plate at a density of 2.5 × 104 cells/cm2. The medium was changed to a differentiation medium on the next day. On day 6, cells were digested by Accutase™ for 7 min at 37 °C. Then iNSCsTLX were seeded into a vitronectin-coated 6-well plate at a density of 2.5 × 104 cells/cm2 and passaged every five days.
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6

Cell Migration and Invasion Assay

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For cell migration assay, 2 × 105 Hep-G2 or Huh-7 cells suspended in serum-free medium were directly planted in the Transwell upper chamber after transfection of target plasmids, and the chamber was kept in cell culture medium supplemented with 20% serum. For the cell invasion assay, cells were seeded in Matrigel basement membrane matrix in the Transwell chamber. After 48 h of incubation, cells were fixed with 4% neutral formaldehyde for 20 min, followed by staining with 0.1% crystal violet for 10 min and washing with PBS. Migration and invasion were observed via an inverted microscope. For RBS6KB1 or SMAD1 blocking, PF-4708671 (MedChemExpress, Shanghai, China) or LDN-193189 (MedChemExpress) was added to the culture medium at a final concentration of 10 μM and 0.5 μM, respectively.
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7

Intestinal Organoid-Mesenchymal Cell Co-culture

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Intestinal villus mesenchymal cells (ivMCs) corresponding to immortalized eGFPhigh cells were seeded on 96‐well plate 2 days before the addition of organoid fragments. TdTomato‐positive crypts were isolated and cultivated as described above in advance to co‐cultivation start. For the co‐cultivation experiment, organoids were mechanically dissociated by pipetting. Organoid chunks were mixed in 10% Matrigel dissolved in ENR organoid medium. Twenty microlitre of crypt/Matrigel/ERN medium suspension containing fragments from roughly 10–20 organoid fragments were added to ivMCs (70–80% confluent at the time of mixing) or empty wells. The plate was incubated 10 min at 37°C and afterwards gently covered with 100 μl complete ENR organoid medium optionally containing 1 μM LDN‐193189 (Medchemexpress). The co‐cultures were analysed after 3 days of cultivation.
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8

Autophagy Regulation by Small Molecules

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KGN (Selleck Chemicals, TX, USA) was dissolved with dimethylsulfoxide (DMSO) as the stock solution. Cells treated with 0.005% DMSO were used as controls. Other reagents applied in the study are listed as follows: 3-methyladenine (3-MA; Selleck Chemicals, TX, USA) (5 mM for 24 h) was used as autophagy inhibitor. Both the signal inhibitor LDN-193189 (LDN; 0.5 μM for 12 h) and the activator SB4 (0.1 μM for 24 h) were purchased from MedChemExpress (MCE, NJ, USA).
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