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Xcalibur software v 2 2 sp1

Manufactured by Thermo Fisher Scientific

Xcalibur™ software v 2.2 SP1.48 is a data acquisition, analysis, and management software platform designed for liquid chromatography-mass spectrometry (LC-MS) systems. The software enables users to control instrument operation, acquire and process data, and manage sample information and results.

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2 protocols using xcalibur software v 2 2 sp1

1

LC-MS Metabolite Profiling Protocol

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LC-MS was performed with a Thermo Fisher Scientific LTQ XL mass spectrometer coupled with a Thermo Scientific UltiMate 3000 HPLC system with a +3.5 kV spray voltage, a 275 °C capillary temperature, a 300 °C heater temperature, a sheath gas flow of 25 L/min, an auxiliary gas flow of 10 L/min, and a mass scan range of 80–900 m/z. The mobile phase was a 30 min gradient flow of (A) 10 mM ammonium formate in 95:5 acetonitrile/water with 0.1% formic acid and (B) 10 mM ammonium formate in 50:50 acetonitrile/water with 0.1% formic acid at a flow rate of 300 µL/min. Extract samples (5 μL) were injected into a Thermo Fisher Scientific Accurore C18 column (100 × 2.1 mm, 2.6 μm particle size) with a column temperature of 40 °C. MS data collection and analysis were performed using Thermo Fisher Scientific Xcalibur™ software v 2.2 SP1.48. Metabolites and their concentrations were determined based on retention time and molecular weight (m/z) using Thermo Fisher Scientific Mass Frontier 7.0 software.
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2

Serum Metabolite Profiling by LC-MS

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LC-MS was performed with a Thermo Fisher Scientific LTQ XL mass spectrometer coupled with a Thermo Scientific UltiMate 3000 HPLC system. The MS detector was set with a +3.5 kV spray voltage, a 275 °C capillary temperature, a 300 °C heater temperature, a sheath gas flow of 25 L/min, auxiliary gas flow of 10 L/min, and a mass scan range of 80–900 m/z.
The gradient mobile phases were (A) 10 mM ammonium formate in 95:5 acetonitrile/water + 0.1% formic acid and (B) 10 mM ammonium formate in 50:50 acetonitrile/water + 0.1% formic acid for 30 min at a flow rate of 300 µL/min. Aliquots of serum extract (5 μL) were injected into a Thermo Fisher Scientific Accurore C18 Column (100 × 2.1 mm, 2.6 μm particle size), with a column temperature of 40 °C. MS data acquisition was performed using Thermo Fisher Scientific Xcalibur™ software v 2.2 SP1.48. Metabolites were determined through comparison of the ion features in the experimental samples to those of control samples based on retention time and molecular weight (m/z) using Thermo-Fisher Scientific Mass Frontier 7.0 software [30 (link),31 ].
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