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7 protocols using plan apo

1

Multimodal Microscopy Imaging Protocol

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Live and fixed cells were imaged under Olympus IX83 inverted wide-field microscope system equipped with an oil ×100/NA 1.40 objective (Plan Apo), an oil ×63/NA 1.40 objective (Plan Apo), and an oil ×40/NA 1.20 objective (fluorite), a motorized stage, a focus drift correction device, a 37 °C enclosed environment chamber, motorized filter cubes, a scientific complementary metal oxide semiconductor camera (Neo; Andor), and a 200-W metal-halide excitation light source (Lumen Pro 200; Prior Scientific). Filters and dichroic mirrors were optimized for GFP/Alexa Fluor 488, mCherry/Alexa Fluor 594, and Alexa Fluor 680. The microscope system was controlled by MetaMorph (Molecular Devices).
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2

Mapping Actin and Keratin Dynamics

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Cells were transfected with Lifeact-GFP and keratin 18-mCherry and seeded on PRIMO micropatterned PDMS, as described previously. Images were taken every 4 s using a Nikon TiE inverted microscope with a spinning-disc confocal unit (CSU-WD, Yokogawa) and a Zyla scientific complementary metal–oxide–semiconductor camera (Andor) controlled by µManager71 (link),72 (link) using a ×60 objective (Plan Apo; NA, 1.2; water-immersion type). The local velocity fields of the actin and keratin fluorescence signals were measured by comparing each frame and its previous time point with a custom-made PIV software in MATLAB. A mask of each cell was drawn with respect to the F-actin signal in ImageJ73 (link). A radial coordinate, centred in the mask centroid, was assigned to each PIV data point, and normalized by the local radius of the cell-mask contour. Likewise, the local velocity fields were decomposed into their radial and tangential components. The distributions of the total and radial velocities inside each cell were then binned into equal-sized intervals of the normalized radial coordinate. The average total and radial velocity for each radial bin was then calculated.
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3

Fluorescent Labeling of Sperm Actin

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After incubation in the appropriate medium, cells were fixed in 0.1% glutaraldehyde and 1.5% formaldehyde in PBS for 1 h and collected by centrifugation at 1300g for 5 min. The sperm pellet was immediately resuspended and incubated with 50 mM NH4Cl in PBS during 15 min and washed twice by resuspension/centrifugation in PBS and once in distilled water. Water-resuspended cells were used to prepare smears on glass slides, which were air-dried at room temperature. Sperm were rinsed with PBS for 7 min and then permeabilized using acetone at −20 °C for 7 min and washed three times in PBS. Slides were then incubated with TRITC-phalloidin (1:30) in PBS for 1 h at room temperature in humid conditions, in the dark. Sperm were washed three times with PBS, once in distilled water and air-dried at room temperature. Finally, they were mounted under coverglass slides using Vectashield mounting media. Nonspecific staining was determined by incubating the sperm in the absence of TRITC-phalloidin. Slides were examined using a fluorescence confocal microscope (Olympus IX83-DSU), and images were captured at 60x magnification (Plan Apo, NA = 1.42 [oil]), with a sCMOS camera (Andor, Zyla). The fluorescence intensity was quantified using ImageJ software1.47 V (National Institute of Health) and was calculated in regions of interest localized in the sperm head. The background intensity was subtracted.
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4

Imaging Microtubules at Room Temperature

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Imaging was performed at room temperature (22 °C) using an inverted microscope (Nikon, Ti-E Eclipse) with a 60 × 1.49 N.A. oil immersion objective (Nikon, Plan Apo) and an EMCCD camera (Andor Technology, iXon Ultra 888). Samples were excited using LU-N4/N4S laser unit (Nikon). Illumination and image acquisition was controlled by NIS Elements Advanced Research software (Nikon). MTs were illuminated using a 647 nm laser. Time-lapse images were acquired at a frame rate of 2.47 FPS with an exposure time of 100 ms.
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5

Multimodal Microscopy for Cellular Imaging

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Immunofluorescence images and actin/keratin retrograde flow experiments were performed in a Nikon TiE inverted microscope with a spinning-disc confocal unit (CSU-WD, Yokogawa) and a Zyla scientific complementary metal–oxide–semiconductor camera (Andor) with μManager (version 1.4.22), using a ×60 objective (Plan Apo; numerical aperture (NA), 1.2; water-immersion type). Epifluorescence images were taken on an automated inverted microscope (Nikon ECLIPSE Ti) using MetaMorph (NIS Elements) imaging software (version 7.7.10) and a ×60 objective (Plan Apo VC; NA, 1.4; oil-immersion type). Higher-resolution confocal images (Extended Data Fig. 4) and three-dimensional segmentation of nuclei (Fig. 5 and Extended Data Fig. 7b–f) were acquired using a ZEISS LSM 880 inverted confocal microscope with Airyscan and a ×63 1.46-NA oil-immersion objective and ZEN (ZEISS, version 2.3 SP1 FP3 black) software. Spheroids were imaged using an inverted ZEISS LSM 880 confocal microscope with an oil-immersion ×40 objective with an NA of 1.3.
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6

Nuclear envelope proximity of telomeres

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Strains containing fluorescently labeled subtelomeres with 128 Lac operators inserted at the sites of interest and constitutive expression of LacI repressor fused to eGFP63 (link) were grown in synthetic complete medium with 2% glucose or 3% ethanol to 1 OD for 20 h at 30 °C. Cells were embedded in agarose patches composed of the same culture medium and sealed using VaLaP (1/3 Vaseline, 1/3 Lanoline, and 1/3 Paraffin). Live cell imaging was performed with a wide field microscopy system featuring a Nikon Ti-E body equipped with the Perfect Focus System and a ×60 oil immersion objective with a numerical aperture of 1.4 (Nikon, Plan APO), an Andor Neo sCMOS camera (field of view of 276 × 233 lm at a pixel size of 108 nm, Andor Driver Pack 3) and LEDs (SpectraX) controlled by the NIS-Elements software 4.60. 3D z-stacks consisting of 25 frames with z-steps of 300 nm were acquired using an eGFP filter with an exposure time of 200 ms. To precisely measure the distance between the spot and the nuclear envelope, images were first deconvolved using iterative Deconvolve 3D plugin and pointing of nuclear envelope edge, locus and opposite side of the nuclear envelope was performed using point picker tool from Image J on a single focal plane. Nucleus diameter was estimated and relative distance between the spot and the edge (at the envelope=0%) was calculated.
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7

Live-cell Microscopic Imaging Setup

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Live and fixed cells were imaged under Olympus IX83 inverted wide-field microscope system equipped with an oil 100×/NA 1.40 objective (Plan Apo), an oil 63×/NA 1.40 objective (Plan Apo) and an oil 40×/NA 1.20 objective (fluorite), a motorized stage, a focus drift correction device, a 37 °C enclosed environment chamber, motorized filter cubes, a scientific complementary metal oxide semiconductor camera (Neo; Andor) and a 200 W metal-halide excitation light source (Lumen Pro 200; Prior Scientific). Filters and dichroic mirrors were optimized for GFP/Alexa Fluor 488, mCherry/Alexa Fluor 594 and Alexa Fluor 680. The microscope system was controlled by MetaMorph (Molecular Devices).
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